Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
COL8A1P27658 ETFA-216ENST00000560726 942 ntTSL 3 BASIC17.14■□□□□ 0.33
COL8A1P27658 PRR29-207ENST00000580752 458 ntTSL 3 BASIC17.14■□□□□ 0.33
COL8A1P27658 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC17.14■□□□□ 0.33
COL8A1P27658 BCL10-202ENST00000620248 774 ntTSL 5 BASIC17.14■□□□□ 0.33
COL8A1P27658 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL8A1P27658 AL031432.5-201ENST00000641059 760 ntBASIC17.14■□□□□ 0.33
COL8A1P27658 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL8A1P27658 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL8A1P27658 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
COL8A1P27658 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL8A1P27658 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL8A1P27658 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC17.14■□□□□ 0.33
COL8A1P27658 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL8A1P27658 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
COL8A1P27658 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
COL8A1P27658 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL8A1P27658 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC17.14■□□□□ 0.33
COL8A1P27658 PALM-207ENST00000590161 2137 ntTSL 4 BASIC17.14■□□□□ 0.33
COL8A1P27658 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL8A1P27658 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL8A1P27658 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC17.13■□□□□ 0.33
COL8A1P27658 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL8A1P27658 TERT-206ENST00000508104 2486 ntTSL 5 BASIC17.13■□□□□ 0.33
COL8A1P27658 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
COL8A1P27658 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL8A1P27658 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL8A1P27658 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC17.13■□□□□ 0.33
COL8A1P27658 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL8A1P27658 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC17.13■□□□□ 0.33
COL8A1P27658 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL8A1P27658 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL8A1P27658 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
COL8A1P27658 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL8A1P27658 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL8A1P27658 HLA-G-202ENST00000376815 851 ntBASIC17.13■□□□□ 0.33
COL8A1P27658 HLA-G-203ENST00000376818 1127 ntBASIC17.13■□□□□ 0.33
COL8A1P27658 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC17.13■□□□□ 0.33
COL8A1P27658 AL136038.3-201ENST00000561909 1096 ntBASIC17.13■□□□□ 0.33
COL8A1P27658 PRELID1P1-202ENST00000567272 903 ntBASIC17.13■□□□□ 0.33
COL8A1P27658 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC17.13■□□□□ 0.33
COL8A1P27658 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC17.13■□□□□ 0.33
COL8A1P27658 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC17.13■□□□□ 0.33
COL8A1P27658 AC010653.2-201ENST00000623505 997 ntBASIC17.13■□□□□ 0.33
COL8A1P27658 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
COL8A1P27658 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL8A1P27658 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
COL8A1P27658 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
COL8A1P27658 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL8A1P27658 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL8A1P27658 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL8A1P27658 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC17.12■□□□□ 0.33
COL8A1P27658 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
COL8A1P27658 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL8A1P27658 AP006587.1-201ENST00000534129 1502 ntBASIC17.12■□□□□ 0.33
COL8A1P27658 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL8A1P27658 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL8A1P27658 RCC2P6-201ENST00000526625 1557 ntBASIC17.12■□□□□ 0.33
COL8A1P27658 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL8A1P27658 ATP5G2P1-201ENST00000433580 426 ntBASIC17.12■□□□□ 0.33
COL8A1P27658 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC17.12■□□□□ 0.33
COL8A1P27658 SKP2-204ENST00000508514 821 ntTSL 3 BASIC17.12■□□□□ 0.33
COL8A1P27658 UNC93B7-201ENST00000509439 705 ntBASIC17.12■□□□□ 0.33
COL8A1P27658 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC17.12■□□□□ 0.33
COL8A1P27658 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC17.12■□□□□ 0.33
COL8A1P27658 DFFB-212ENST00000625756 649 ntTSL 5 BASIC17.12■□□□□ 0.33
COL8A1P27658 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
COL8A1P27658 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL8A1P27658 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
COL8A1P27658 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL8A1P27658 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL8A1P27658 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC17.12■□□□□ 0.33
COL8A1P27658 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL8A1P27658 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL8A1P27658 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
COL8A1P27658 KRT8P36-201ENST00000489121 1440 ntBASIC17.12■□□□□ 0.33
COL8A1P27658 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL8A1P27658 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
COL8A1P27658 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
COL8A1P27658 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL8A1P27658 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL8A1P27658 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL8A1P27658 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL8A1P27658 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
COL8A1P27658 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
COL8A1P27658 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL8A1P27658 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL8A1P27658 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL8A1P27658 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC17.11■□□□□ 0.33
COL8A1P27658 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL8A1P27658 AC004870.1-201ENST00000315132 882 ntBASIC17.11■□□□□ 0.33
COL8A1P27658 CALM3-202ENST00000391918 702 ntTSL 2 BASIC17.11■□□□□ 0.33
COL8A1P27658 SLC25A1P2-201ENST00000430693 912 ntBASIC17.11■□□□□ 0.33
COL8A1P27658 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC17.11■□□□□ 0.33
COL8A1P27658 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC17.11■□□□□ 0.33
COL8A1P27658 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL8A1P27658 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL8A1P27658 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
COL8A1P27658 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL8A1P27658 AC092338.2-201ENST00000568827 1415 ntBASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms