Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC21.56■■□□□ 1.04
TPM1P09493 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
TPM1P09493 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC21.56■■□□□ 1.04
TPM1P09493 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
TPM1P09493 NEFHP1-201ENST00000412845 2629 ntBASIC21.56■■□□□ 1.04
TPM1P09493 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC21.56■■□□□ 1.04
TPM1P09493 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
TPM1P09493 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
TPM1P09493 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
TPM1P09493 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
TPM1P09493 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
TPM1P09493 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
TPM1P09493 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
TPM1P09493 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC21.55■■□□□ 1.04
TPM1P09493 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
TPM1P09493 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
TPM1P09493 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
TPM1P09493 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
TPM1P09493 HLA-G-202ENST00000376815 851 ntBASIC21.55■■□□□ 1.04
TPM1P09493 HLA-G-203ENST00000376818 1127 ntBASIC21.55■■□□□ 1.04
TPM1P09493 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
TPM1P09493 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
TPM1P09493 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC21.55■■□□□ 1.04
TPM1P09493 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC21.55■■□□□ 1.04
TPM1P09493 LINC01465-201ENST00000408887 1940 ntBASIC21.55■■□□□ 1.04
TPM1P09493 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
TPM1P09493 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
TPM1P09493 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
TPM1P09493 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
TPM1P09493 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
TPM1P09493 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC21.54■■□□□ 1.04
TPM1P09493 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
TPM1P09493 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC21.54■■□□□ 1.04
TPM1P09493 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
TPM1P09493 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC21.54■■□□□ 1.04
TPM1P09493 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
TPM1P09493 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
TPM1P09493 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
TPM1P09493 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
TPM1P09493 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
TPM1P09493 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
TPM1P09493 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
TPM1P09493 BMP1-204ENST00000397814 836 ntTSL 4 BASIC21.54■■□□□ 1.04
TPM1P09493 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC21.54■■□□□ 1.04
TPM1P09493 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
TPM1P09493 AC010536.3-201ENST00000620306 533 ntBASIC21.54■■□□□ 1.04
TPM1P09493 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
TPM1P09493 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
TPM1P09493 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
TPM1P09493 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
TPM1P09493 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
TPM1P09493 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC21.54■■□□□ 1.04
TPM1P09493 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC21.54■■□□□ 1.04
TPM1P09493 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
TPM1P09493 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
TPM1P09493 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC21.54■■□□□ 1.04
TPM1P09493 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
TPM1P09493 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
TPM1P09493 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
TPM1P09493 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
TPM1P09493 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
TPM1P09493 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
TPM1P09493 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
TPM1P09493 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC21.53■■□□□ 1.04
TPM1P09493 GAS2L1P2-201ENST00000436355 1356 ntBASIC21.53■■□□□ 1.04
TPM1P09493 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
TPM1P09493 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
TPM1P09493 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
TPM1P09493 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
TPM1P09493 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
TPM1P09493 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC21.53■■□□□ 1.04
TPM1P09493 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC21.53■■□□□ 1.04
TPM1P09493 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
TPM1P09493 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC21.53■■□□□ 1.04
TPM1P09493 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC21.53■■□□□ 1.04
TPM1P09493 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
TPM1P09493 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
TPM1P09493 HTR7P1-202ENST00000624664 4411 ntBASIC21.53■■□□□ 1.04
TPM1P09493 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
TPM1P09493 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC21.53■■□□□ 1.04
TPM1P09493 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
TPM1P09493 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC21.53■■□□□ 1.04
TPM1P09493 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
TPM1P09493 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
TPM1P09493 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
TPM1P09493 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
TPM1P09493 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
TPM1P09493 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
TPM1P09493 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC21.52■■□□□ 1.04
TPM1P09493 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC21.52■■□□□ 1.04
TPM1P09493 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC21.52■■□□□ 1.04
TPM1P09493 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC21.52■■□□□ 1.04
TPM1P09493 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
TPM1P09493 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC21.52■■□□□ 1.04
TPM1P09493 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
TPM1P09493 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC21.52■■□□□ 1.04
TPM1P09493 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
TPM1P09493 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
TPM1P09493 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.03
TPM1P09493 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms