Protein–RNA interactions for Protein: O95985

TOP3B, DNA topoisomerase 3-beta-1, humanhuman

Known RBP Predictions only

Length 862 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3BO95985 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
TOP3BO95985 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TOP3BO95985 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC20.05■□□□□ 0.8
TOP3BO95985 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC20.05■□□□□ 0.8
TOP3BO95985 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC20.05■□□□□ 0.8
TOP3BO95985 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TOP3BO95985 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC20.05■□□□□ 0.8
TOP3BO95985 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC20.05■□□□□ 0.8
TOP3BO95985 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC20.05■□□□□ 0.8
TOP3BO95985 CD177P1-201ENST00000606252 935 ntBASIC20.05■□□□□ 0.8
TOP3BO95985 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
TOP3BO95985 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
TOP3BO95985 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
TOP3BO95985 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
TOP3BO95985 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC20.05■□□□□ 0.8
TOP3BO95985 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TOP3BO95985 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TOP3BO95985 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC20.04■□□□□ 0.8
TOP3BO95985 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC20.04■□□□□ 0.8
TOP3BO95985 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC20.04■□□□□ 0.8
TOP3BO95985 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TOP3BO95985 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC20.04■□□□□ 0.8
TOP3BO95985 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
TOP3BO95985 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC20.04■□□□□ 0.8
TOP3BO95985 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC20.04■□□□□ 0.8
TOP3BO95985 POM121L13P-201ENST00000422362 380 ntBASIC20.04■□□□□ 0.8
TOP3BO95985 AC007322.3-201ENST00000426526 701 ntBASIC20.04■□□□□ 0.8
TOP3BO95985 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
TOP3BO95985 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC20.04■□□□□ 0.8
TOP3BO95985 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC20.04■□□□□ 0.8
TOP3BO95985 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC20.04■□□□□ 0.8
TOP3BO95985 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC20.04■□□□□ 0.8
TOP3BO95985 KLF2-202ENST00000592003 564 ntTSL 3 BASIC20.04■□□□□ 0.8
TOP3BO95985 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
TOP3BO95985 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
TOP3BO95985 AC113410.3-201ENST00000623366 203 ntBASIC20.04■□□□□ 0.8
TOP3BO95985 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC20.04■□□□□ 0.8
TOP3BO95985 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
TOP3BO95985 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TOP3BO95985 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
TOP3BO95985 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC20.04■□□□□ 0.8
TOP3BO95985 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TOP3BO95985 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TOP3BO95985 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TOP3BO95985 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TOP3BO95985 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC20.04■□□□□ 0.8
TOP3BO95985 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC20.03■□□□□ 0.8
TOP3BO95985 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
TOP3BO95985 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TOP3BO95985 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TOP3BO95985 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TOP3BO95985 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TOP3BO95985 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TOP3BO95985 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TOP3BO95985 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC20.03■□□□□ 0.8
TOP3BO95985 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
TOP3BO95985 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC20.03■□□□□ 0.8
TOP3BO95985 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC20.03■□□□□ 0.8
TOP3BO95985 MIR4785-201ENST00000585005 73 ntBASIC20.03■□□□□ 0.8
TOP3BO95985 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC20.03■□□□□ 0.8
TOP3BO95985 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC20.03■□□□□ 0.8
TOP3BO95985 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
TOP3BO95985 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TOP3BO95985 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
TOP3BO95985 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
TOP3BO95985 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TOP3BO95985 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
TOP3BO95985 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TOP3BO95985 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
TOP3BO95985 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TOP3BO95985 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
TOP3BO95985 AC098818.2-201ENST00000564925 2320 ntBASIC20.02■□□□□ 0.8
TOP3BO95985 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
TOP3BO95985 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
TOP3BO95985 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TOP3BO95985 CD44-222ENST00000526025 1052 ntTSL 2 BASIC20.02■□□□□ 0.8
TOP3BO95985 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TOP3BO95985 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
TOP3BO95985 AL023875.1-201ENST00000640777 796 ntBASIC20.02■□□□□ 0.8
TOP3BO95985 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
TOP3BO95985 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC20.02■□□□□ 0.8
TOP3BO95985 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TOP3BO95985 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC20.02■□□□□ 0.8
TOP3BO95985 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.02■□□□□ 0.79
TOP3BO95985 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
TOP3BO95985 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
TOP3BO95985 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
TOP3BO95985 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
TOP3BO95985 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.79
TOP3BO95985 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC20.02■□□□□ 0.79
TOP3BO95985 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
TOP3BO95985 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC20.01■□□□□ 0.79
TOP3BO95985 H19-201ENST00000411754 1788 ntTSL 5 BASIC20.01■□□□□ 0.79
TOP3BO95985 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TOP3BO95985 BX119927.1-201ENST00000636596 1552 ntBASIC20.01■□□□□ 0.79
TOP3BO95985 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TOP3BO95985 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC20.01■□□□□ 0.79
TOP3BO95985 AL020996.1-203ENST00000536896 2307 ntBASIC20.01■□□□□ 0.79
TOP3BO95985 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TOP3BO95985 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms