Protein–RNA interactions for Protein: E9PGA6

C1QTNF3-AMACR, C1QTNF3-AMACR readthrough (NMD candidate), humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C1QTNF3-AMACRE9PGA6 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 AC079598.2-202ENST00000546624 1451 ntBASIC19.65■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 MIR1238-201ENST00000408483 83 ntBASIC19.64■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC19.64■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 NME1-207ENST00000480143 964 ntTSL 2 BASIC19.64■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC19.64■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC19.64■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC19.64■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 ABBA01031674.1-201ENST00000635145 728 ntBASIC19.64■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 HLA-A-209ENST00000638375 975 ntBASIC19.64■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 AC009237.14-201ENST00000609975 1594 ntBASIC19.64■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC19.64■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC19.63■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC19.63■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC19.63■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC19.63■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC19.63■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC19.63■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 GRAMD4P8-201ENST00000605465 1115 ntBASIC19.63■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 DGCR10-201ENST00000609839 495 ntBASIC19.63■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 AL691432.2-201ENST00000607222 2038 ntBASIC19.63■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC19.62■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC19.62■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC19.62■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC19.62■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 B3GAT3P1-201ENST00000471720 806 ntBASIC19.62■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC19.62■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC19.62■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC19.62■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 AC097493.4-201ENST00000641197 219 ntBASIC19.62■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC19.62■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.61■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.61■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 FITM1-202ENST00000559294 800 ntBASIC19.61■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC19.61■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC19.61■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC19.61■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC19.61■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC19.6■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
C1QTNF3-AMACRE9PGA6 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC19.6■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 10.8 ms