Protein–RNA interactions for Protein: A0A0B4J266

TRAV41, T-cell receptor alpha variable 41 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV41A0A0B4J266 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC15.44■□□□□ 0.06
TRAV41A0A0B4J266 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRAV41A0A0B4J266 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRAV41A0A0B4J266 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
TRAV41A0A0B4J266 SERF2-207ENST00000409614 582 ntTSL 2 BASIC15.44■□□□□ 0.06
TRAV41A0A0B4J266 AC133681.1-201ENST00000465482 601 ntBASIC15.44■□□□□ 0.06
TRAV41A0A0B4J266 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC15.44■□□□□ 0.06
TRAV41A0A0B4J266 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC15.44■□□□□ 0.06
TRAV41A0A0B4J266 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC15.44■□□□□ 0.06
TRAV41A0A0B4J266 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
TRAV41A0A0B4J266 AC110285.5-201ENST00000611501 352 ntBASIC15.44■□□□□ 0.06
TRAV41A0A0B4J266 AL359736.2-201ENST00000621992 437 ntBASIC15.44■□□□□ 0.06
TRAV41A0A0B4J266 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRAV41A0A0B4J266 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRAV41A0A0B4J266 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
TRAV41A0A0B4J266 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC15.44■□□□□ 0.06
TRAV41A0A0B4J266 ME2-218ENST00000640965 2476 ntTSL 5 BASIC15.44■□□□□ 0.06
TRAV41A0A0B4J266 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRAV41A0A0B4J266 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRAV41A0A0B4J266 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
TRAV41A0A0B4J266 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
TRAV41A0A0B4J266 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC15.44■□□□□ 0.06
TRAV41A0A0B4J266 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRAV41A0A0B4J266 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRAV41A0A0B4J266 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRAV41A0A0B4J266 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
TRAV41A0A0B4J266 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC15.43■□□□□ 0.06
TRAV41A0A0B4J266 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
TRAV41A0A0B4J266 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC15.43■□□□□ 0.06
TRAV41A0A0B4J266 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC15.43■□□□□ 0.06
TRAV41A0A0B4J266 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
TRAV41A0A0B4J266 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC15.43■□□□□ 0.06
TRAV41A0A0B4J266 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRAV41A0A0B4J266 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
TRAV41A0A0B4J266 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
TRAV41A0A0B4J266 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC15.43■□□□□ 0.06
TRAV41A0A0B4J266 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC15.43■□□□□ 0.06
TRAV41A0A0B4J266 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC15.43■□□□□ 0.06
TRAV41A0A0B4J266 AL158047.1-201ENST00000445918 881 ntBASIC15.43■□□□□ 0.06
TRAV41A0A0B4J266 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC15.43■□□□□ 0.06
TRAV41A0A0B4J266 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRAV41A0A0B4J266 GOLGA6L3-201ENST00000507199 1679 ntBASIC15.43■□□□□ 0.06
TRAV41A0A0B4J266 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRAV41A0A0B4J266 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
TRAV41A0A0B4J266 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC15.43■□□□□ 0.06
TRAV41A0A0B4J266 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC15.43■□□□□ 0.06
TRAV41A0A0B4J266 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRAV41A0A0B4J266 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRAV41A0A0B4J266 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRAV41A0A0B4J266 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRAV41A0A0B4J266 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
TRAV41A0A0B4J266 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRAV41A0A0B4J266 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
TRAV41A0A0B4J266 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRAV41A0A0B4J266 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
TRAV41A0A0B4J266 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC15.43■□□□□ 0.06
TRAV41A0A0B4J266 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC15.43■□□□□ 0.06
TRAV41A0A0B4J266 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC15.42■□□□□ 0.06
TRAV41A0A0B4J266 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
TRAV41A0A0B4J266 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC15.42■□□□□ 0.06
TRAV41A0A0B4J266 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC15.42■□□□□ 0.06
TRAV41A0A0B4J266 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TRAV41A0A0B4J266 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TRAV41A0A0B4J266 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC15.42■□□□□ 0.06
TRAV41A0A0B4J266 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC15.42■□□□□ 0.06
TRAV41A0A0B4J266 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC15.42■□□□□ 0.06
TRAV41A0A0B4J266 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC15.42■□□□□ 0.06
TRAV41A0A0B4J266 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
TRAV41A0A0B4J266 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
TRAV41A0A0B4J266 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC15.42■□□□□ 0.06
TRAV41A0A0B4J266 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TRAV41A0A0B4J266 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC15.42■□□□□ 0.06
TRAV41A0A0B4J266 F2R-202ENST00000505600 442 ntTSL 2 BASIC15.42■□□□□ 0.06
TRAV41A0A0B4J266 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC15.42■□□□□ 0.06
TRAV41A0A0B4J266 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
TRAV41A0A0B4J266 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC15.42■□□□□ 0.06
TRAV41A0A0B4J266 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
TRAV41A0A0B4J266 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TRAV41A0A0B4J266 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TRAV41A0A0B4J266 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC15.42■□□□□ 0.06
TRAV41A0A0B4J266 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TRAV41A0A0B4J266 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TRAV41A0A0B4J266 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC15.42■□□□□ 0.06
TRAV41A0A0B4J266 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TRAV41A0A0B4J266 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TRAV41A0A0B4J266 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRAV41A0A0B4J266 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRAV41A0A0B4J266 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRAV41A0A0B4J266 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
TRAV41A0A0B4J266 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
TRAV41A0A0B4J266 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRAV41A0A0B4J266 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
TRAV41A0A0B4J266 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
TRAV41A0A0B4J266 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC15.41■□□□□ 0.06
TRAV41A0A0B4J266 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRAV41A0A0B4J266 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRAV41A0A0B4J266 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRAV41A0A0B4J266 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
TRAV41A0A0B4J266 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC15.41■□□□□ 0.06
TRAV41A0A0B4J266 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC15.41■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms