Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 MYC-209ENST00000641252 345 ntBASIC26.4■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC26.4■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC26.4■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC26.4■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC26.39■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC26.39■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC26.39■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC26.39■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC26.39■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC26.39■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC26.39■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 RNF146-204ENST00000476956 884 ntTSL 2 BASIC26.39■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 AC026366.1-201ENST00000488803 879 ntBASIC26.39■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC26.39■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC26.39■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC26.39■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC26.38■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC26.38■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC26.38■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC26.38■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC26.38■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 AL031963.3-201ENST00000606441 850 ntBASIC26.38■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC26.38■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC26.38■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC26.37■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC26.37■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC26.37■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC26.37■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC26.37■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC26.37■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC26.37■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC26.37■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC26.37■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC26.37■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC26.37■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC26.37■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC26.36■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC26.36■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC26.36■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 HES2-206ENST00000489730 730 ntTSL 2 BASIC26.36■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC26.36■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC26.36■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC26.36■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC26.36■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC26.36■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC26.36■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC26.35■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC26.35■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC26.35■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC26.35■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 KRT8P20-201ENST00000423953 1409 ntBASIC26.35■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC26.35■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 AL121894.2-201ENST00000602977 491 ntBASIC26.35■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC26.35■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC26.34■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC26.34■■□□□ 1.81
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms