Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC3.08□□□□□ -1.92
HSPG2P98160 ZNF397-202ENST00000330501 5251 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
HSPG2P98160 KLC1-204ENST00000348520 15091 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
HSPG2P98160 SORBS2-201ENST00000284776 5996 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
HSPG2P98160 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC3.08□□□□□ -1.92
HSPG2P98160 BNIP2-202ENST00000415213 1509 ntTSL 2 BASIC3.08□□□□□ -1.92
HSPG2P98160 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
HSPG2P98160 MTCO1P49-201ENST00000523429 802 ntBASIC3.08□□□□□ -1.92
HSPG2P98160 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
HSPG2P98160 AC084783.1-201ENST00000565846 910 ntBASIC3.08□□□□□ -1.92
HSPG2P98160 AL049536.1-201ENST00000625043 744 ntBASIC3.08□□□□□ -1.92
HSPG2P98160 SLAMF6-203ENST00000368059 2743 ntAPPRIS P3 TSL 1 (best) BASIC3.08□□□□□ -1.92
HSPG2P98160 EFCAB6-203ENST00000396231 4424 ntAPPRIS ALT2 TSL 1 (best) BASIC3.08□□□□□ -1.92
HSPG2P98160 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC3.08□□□□□ -1.92
HSPG2P98160 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
HSPG2P98160 EIF3E-206ENST00000519030 1324 ntTSL 5 BASIC3.08□□□□□ -1.92
HSPG2P98160 MYLK4-201ENST00000274643 5806 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
HSPG2P98160 PCDH15-210ENST00000395438 5806 ntAPPRIS ALT2 TSL 5 BASIC3.08□□□□□ -1.92
HSPG2P98160 MRE11-201ENST00000323929 6897 ntAPPRIS P3 TSL 1 (best) BASIC3.08□□□□□ -1.92
HSPG2P98160 TNC-202ENST00000350763 7641 ntAPPRIS P2 TSL 1 (best) BASIC3.08□□□□□ -1.92
HSPG2P98160 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
HSPG2P98160 ROBO2-202ENST00000461745 8946 ntAPPRIS P2 TSL 1 (best) BASIC3.08□□□□□ -1.92
HSPG2P98160 CEP120-202ENST00000306481 4629 ntTSL 5 BASIC3.08□□□□□ -1.92
HSPG2P98160 TFDP2-224ENST00000499676 9335 ntAPPRIS ALT2 TSL 1 (best) BASIC3.08□□□□□ -1.92
HSPG2P98160 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
HSPG2P98160 RGS6-204ENST00000404301 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC3.08□□□□□ -1.92
HSPG2P98160 RGS6-206ENST00000407322 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC3.08□□□□□ -1.92
HSPG2P98160 AL355834.1-201ENST00000556602 3965 ntBASIC3.08□□□□□ -1.92
HSPG2P98160 AC119674.1-213ENST00000641177 1386 ntBASIC3.08□□□□□ -1.92
HSPG2P98160 FP325330.3-201ENST00000623760 9537 ntBASIC3.08□□□□□ -1.92
HSPG2P98160 LINC00314-201ENST00000324988 607 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
HSPG2P98160 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
HSPG2P98160 AL161909.1-201ENST00000397390 712 ntBASIC3.08□□□□□ -1.92
HSPG2P98160 AL121977.1-201ENST00000401636 979 ntBASIC3.08□□□□□ -1.92
HSPG2P98160 OR8G2P-201ENST00000412796 908 ntBASIC3.08□□□□□ -1.92
HSPG2P98160 CLYBL-AS2-201ENST00000430125 695 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
HSPG2P98160 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC3.08□□□□□ -1.92
HSPG2P98160 HMGB1P4-201ENST00000455362 567 ntBASIC3.08□□□□□ -1.92
HSPG2P98160 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC3.08□□□□□ -1.92
HSPG2P98160 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC3.08□□□□□ -1.92
HSPG2P98160 ARL6IP1P3-201ENST00000524544 560 ntBASIC3.08□□□□□ -1.92
HSPG2P98160 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC3.08□□□□□ -1.92
HSPG2P98160 LINC02394-201ENST00000549140 543 ntTSL 4 BASIC3.08□□□□□ -1.92
HSPG2P98160 AP000919.3-201ENST00000582591 568 ntTSL 3 BASIC3.08□□□□□ -1.92
HSPG2P98160 AL353729.2-201ENST00000605859 1249 ntBASIC3.08□□□□□ -1.92
HSPG2P98160 MVP-219ENST00000629059 120 ntTSL 5 BASIC3.08□□□□□ -1.92
HSPG2P98160 PTPRT-204ENST00000373190 12559 ntAPPRIS ALT2 TSL 5 BASIC3.08□□□□□ -1.92
HSPG2P98160 PLEKHG4B-201ENST00000283426 11515 ntAPPRIS P2 TSL 1 (best) BASIC3.08□□□□□ -1.92
HSPG2P98160 GFPT1-201ENST00000357308 8703 ntTSL 5 BASIC3.08□□□□□ -1.92
HSPG2P98160 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC3.08□□□□□ -1.92
HSPG2P98160 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
HSPG2P98160 ABCA9-202ENST00000453985 6116 ntTSL 5 BASIC3.08□□□□□ -1.92
HSPG2P98160 STX3-208ENST00000641815 3236 ntBASIC3.08□□□□□ -1.92
HSPG2P98160 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC3.07□□□□□ -1.92
HSPG2P98160 ATAD5-201ENST00000321990 6869 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
HSPG2P98160 HMMR-204ENST00000432118 2084 ntAPPRIS ALT2 TSL 2 BASIC3.07□□□□□ -1.92
HSPG2P98160 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
HSPG2P98160 TRAV35-201ENST00000390462 330 ntBASIC3.07□□□□□ -1.92
HSPG2P98160 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.07□□□□□ -1.92
HSPG2P98160 RPL7AP25-201ENST00000423357 805 ntBASIC3.07□□□□□ -1.92
HSPG2P98160 LINC01133-202ENST00000443364 1266 ntTSL 5 BASIC3.07□□□□□ -1.92
HSPG2P98160 AC011742.2-201ENST00000443818 352 ntBASIC3.07□□□□□ -1.92
HSPG2P98160 AC108463.1-201ENST00000450258 347 ntBASIC3.07□□□□□ -1.92
HSPG2P98160 ENPP7P9-201ENST00000514456 627 ntBASIC3.07□□□□□ -1.92
HSPG2P98160 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC3.07□□□□□ -1.92
HSPG2P98160 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC3.07□□□□□ -1.92
HSPG2P98160 RN7SL176P-201ENST00000580352 264 ntBASIC3.07□□□□□ -1.92
HSPG2P98160 BACH2-201ENST00000257749 9113 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
HSPG2P98160 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
HSPG2P98160 COL25A1-208ENST00000610288 4799 ntTSL 5 BASIC3.07□□□□□ -1.92
HSPG2P98160 LINC01138-208ENST00000639159 1521 ntTSL 5 BASIC3.07□□□□□ -1.92
HSPG2P98160 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC3.07□□□□□ -1.92
HSPG2P98160 PSD4-205ENST00000441564 11234 ntAPPRIS ALT2 TSL 1 (best) BASIC3.07□□□□□ -1.92
HSPG2P98160 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
HSPG2P98160 AL590240.1-201ENST00000334118 313 ntBASIC3.07□□□□□ -1.92
HSPG2P98160 DCLK1-202ENST00000360631 8007 ntAPPRIS ALT2 TSL 5 BASIC3.07□□□□□ -1.92
HSPG2P98160 RNU6-525P-201ENST00000363685 104 ntBASIC3.07□□□□□ -1.92
HSPG2P98160 RNA5-8SP5-201ENST00000365304 152 ntBASIC3.07□□□□□ -1.92
HSPG2P98160 SNORA66-201ENST00000384792 133 ntBASIC3.07□□□□□ -1.92
HSPG2P98160 AC000124.1-201ENST00000448311 957 ntTSL 2 BASIC3.07□□□□□ -1.92
HSPG2P98160 RN7SL188P-201ENST00000469842 285 ntBASIC3.07□□□□□ -1.92
HSPG2P98160 MRPL49P2-201ENST00000521066 465 ntBASIC3.07□□□□□ -1.92
HSPG2P98160 SDHAF2-208ENST00000543265 438 ntTSL 5 BASIC3.07□□□□□ -1.92
HSPG2P98160 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
HSPG2P98160 H3F3BP2-201ENST00000583907 357 ntBASIC3.07□□□□□ -1.92
HSPG2P98160 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC3.07□□□□□ -1.92
HSPG2P98160 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC3.07□□□□□ -1.92
HSPG2P98160 MYO1E-201ENST00000288235 8673 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
HSPG2P98160 ASH1L-202ENST00000392403 10979 ntAPPRIS P2 TSL 5 BASIC3.07□□□□□ -1.92
HSPG2P98160 NEK1-208ENST00000512193 4430 ntAPPRIS ALT2 TSL 1 (best) BASIC3.07□□□□□ -1.92
HSPG2P98160 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC3.07□□□□□ -1.92
HSPG2P98160 DCN-218ENST00000551354 2924 ntTSL 3 BASIC3.07□□□□□ -1.92
HSPG2P98160 LRBA-204ENST00000507224 8826 ntTSL 5 BASIC3.07□□□□□ -1.92
HSPG2P98160 KPNA6-201ENST00000373625 7378 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
HSPG2P98160 MIR659-201ENST00000384963 97 ntBASIC3.07□□□□□ -1.92
HSPG2P98160 AL354766.1-201ENST00000423396 542 ntBASIC3.07□□□□□ -1.92
HSPG2P98160 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC3.07□□□□□ -1.92
HSPG2P98160 RN7SL303P-201ENST00000469773 251 ntBASIC3.07□□□□□ -1.92
HSPG2P98160 RPS27AP16-201ENST00000492222 470 ntBASIC3.07□□□□□ -1.92
HSPG2P98160 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC3.07□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 109.5 ms