Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 TMEM30CP-203ENST00000637814 1035 ntBASIC7.39□□□□□ -1.23
CHMP4AQ9BY43 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC7.39□□□□□ -1.23
CHMP4AQ9BY43 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
CHMP4AQ9BY43 CX3CR1-201ENST00000358309 3151 ntTSL 2 BASIC7.39□□□□□ -1.23
CHMP4AQ9BY43 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC7.39□□□□□ -1.23
CHMP4AQ9BY43 CPS1-IT1-201ENST00000628368 2306 ntBASIC7.39□□□□□ -1.23
CHMP4AQ9BY43 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC7.39□□□□□ -1.23
CHMP4AQ9BY43 ACOD1-202ENST00000449753 2097 ntAPPRIS ALT2 TSL 3 BASIC7.39□□□□□ -1.23
CHMP4AQ9BY43 TMPRSS11BNL-202ENST00000510782 3202 ntTSL 2 BASIC7.39□□□□□ -1.23
CHMP4AQ9BY43 BEND2-201ENST00000380030 1938 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
CHMP4AQ9BY43 SLC12A6-204ENST00000397707 4194 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
CHMP4AQ9BY43 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
CHMP4AQ9BY43 OPRM1-219ENST00000522555 2440 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
CHMP4AQ9BY43 CDC42BPA-201ENST00000334218 10134 ntTSL 5 BASIC7.38□□□□□ -1.23
CHMP4AQ9BY43 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
CHMP4AQ9BY43 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC7.38□□□□□ -1.23
CHMP4AQ9BY43 PHF11-215ENST00000488958 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC7.38□□□□□ -1.23
CHMP4AQ9BY43 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC7.38□□□□□ -1.23
CHMP4AQ9BY43 RN7SKP78-201ENST00000364711 318 ntBASIC7.38□□□□□ -1.23
CHMP4AQ9BY43 RPS26P38-201ENST00000414476 348 ntBASIC7.38□□□□□ -1.23
CHMP4AQ9BY43 LINC00308-201ENST00000419431 727 ntTSL 5 BASIC7.38□□□□□ -1.23
CHMP4AQ9BY43 AL669841.1-201ENST00000425723 558 ntTSL 2 BASIC7.38□□□□□ -1.23
CHMP4AQ9BY43 AL358876.1-201ENST00000453364 1075 ntBASIC7.38□□□□□ -1.23
CHMP4AQ9BY43 AC073130.1-202ENST00000454897 587 ntTSL 2 BASIC7.38□□□□□ -1.23
CHMP4AQ9BY43 IQCJ-SCHIP1-AS1-201ENST00000460574 508 ntTSL 3 BASIC7.38□□□□□ -1.23
CHMP4AQ9BY43 PDCL3P4-201ENST00000489621 720 ntBASIC7.38□□□□□ -1.23
CHMP4AQ9BY43 AC015864.1-201ENST00000496512 544 ntBASIC7.38□□□□□ -1.23
CHMP4AQ9BY43 AC113382.2-201ENST00000506911 646 ntTSL 3 BASIC7.38□□□□□ -1.23
CHMP4AQ9BY43 HMGB1P47-201ENST00000511281 589 ntBASIC7.38□□□□□ -1.23
CHMP4AQ9BY43 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
CHMP4AQ9BY43 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC7.38□□□□□ -1.23
CHMP4AQ9BY43 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC7.38□□□□□ -1.23
CHMP4AQ9BY43 AC015802.2-201ENST00000589690 189 ntBASIC7.38□□□□□ -1.23
CHMP4AQ9BY43 AC123786.2-201ENST00000603459 275 ntBASIC7.38□□□□□ -1.23
CHMP4AQ9BY43 AC006363.1-201ENST00000603806 463 ntBASIC7.38□□□□□ -1.23
CHMP4AQ9BY43 AL133481.2-203ENST00000607558 139 ntBASIC7.38□□□□□ -1.23
CHMP4AQ9BY43 AP001153.1-201ENST00000641024 338 ntBASIC7.38□□□□□ -1.23
CHMP4AQ9BY43 AC008691.1-209ENST00000642094 814 ntBASIC7.38□□□□□ -1.23
CHMP4AQ9BY43 AC004158.1-201ENST00000564508 4319 ntBASIC7.38□□□□□ -1.23
CHMP4AQ9BY43 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
CHMP4AQ9BY43 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
CHMP4AQ9BY43 AP004607.3-201ENST00000530354 3915 ntBASIC7.37□□□□□ -1.23
CHMP4AQ9BY43 SERPINA9-204ENST00000424550 1462 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
CHMP4AQ9BY43 AC005154.1-228ENST00000454922 1405 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
CHMP4AQ9BY43 LINC00615-201ENST00000546725 1406 ntTSL 2 BASIC7.37□□□□□ -1.23
CHMP4AQ9BY43 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
CHMP4AQ9BY43 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC7.37□□□□□ -1.23
CHMP4AQ9BY43 HSPA8P14-201ENST00000552265 1805 ntBASIC7.37□□□□□ -1.23
CHMP4AQ9BY43 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
CHMP4AQ9BY43 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
CHMP4AQ9BY43 HBG1-201ENST00000330597 808 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
CHMP4AQ9BY43 AL159987.1-201ENST00000347911 293 ntBASIC7.37□□□□□ -1.23
CHMP4AQ9BY43 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC7.37□□□□□ -1.23
CHMP4AQ9BY43 RN7SKP279-201ENST00000411383 298 ntBASIC7.37□□□□□ -1.23
CHMP4AQ9BY43 LINC00161-201ENST00000412526 870 ntTSL 2 BASIC7.37□□□□□ -1.23
CHMP4AQ9BY43 AL357752.1-201ENST00000412817 349 ntBASIC7.37□□□□□ -1.23
CHMP4AQ9BY43 AL360007.1-201ENST00000426166 349 ntTSL 3 BASIC7.37□□□□□ -1.23
CHMP4AQ9BY43 RPS3AP38-201ENST00000435889 763 ntBASIC7.37□□□□□ -1.23
CHMP4AQ9BY43 C21orf91-OT1-203ENST00000439392 497 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
CHMP4AQ9BY43 AL606490.8-201ENST00000441624 319 ntBASIC7.37□□□□□ -1.23
CHMP4AQ9BY43 DNAJC19P5-201ENST00000443295 316 ntBASIC7.37□□□□□ -1.23
CHMP4AQ9BY43 SYPL1-205ENST00000470347 1193 ntTSL 3 BASIC7.37□□□□□ -1.23
CHMP4AQ9BY43 AC109481.1-201ENST00000509173 282 ntBASIC7.37□□□□□ -1.23
CHMP4AQ9BY43 AC027343.2-201ENST00000513219 343 ntTSL 3 BASIC7.37□□□□□ -1.23
CHMP4AQ9BY43 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC7.37□□□□□ -1.23
CHMP4AQ9BY43 AC140125.1-201ENST00000515739 684 ntTSL 5 BASIC7.37□□□□□ -1.23
CHMP4AQ9BY43 RN7SKP67-201ENST00000515905 235 ntBASIC7.37□□□□□ -1.23
CHMP4AQ9BY43 AC139365.2-201ENST00000517972 253 ntBASIC7.37□□□□□ -1.23
CHMP4AQ9BY43 AP002518.2-201ENST00000544925 393 ntTSL 5 BASIC7.37□□□□□ -1.23
CHMP4AQ9BY43 AC022404.1-201ENST00000555320 273 ntBASIC7.37□□□□□ -1.23
CHMP4AQ9BY43 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC7.37□□□□□ -1.23
CHMP4AQ9BY43 MIR4505-201ENST00000582238 73 ntBASIC7.37□□□□□ -1.23
CHMP4AQ9BY43 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC7.37□□□□□ -1.23
CHMP4AQ9BY43 ASNSD1-209ENST00000607829 581 ntTSL 2 BASIC7.37□□□□□ -1.23
CHMP4AQ9BY43 RNA5SP440-201ENST00000612665 119 ntBASIC7.37□□□□□ -1.23
CHMP4AQ9BY43 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC7.37□□□□□ -1.23
CHMP4AQ9BY43 AL390318.1-201ENST00000624564 687 ntBASIC7.37□□□□□ -1.23
CHMP4AQ9BY43 AL359094.1-202ENST00000629917 1113 ntTSL 5 BASIC7.37□□□□□ -1.23
CHMP4AQ9BY43 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
CHMP4AQ9BY43 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC7.37□□□□□ -1.23
CHMP4AQ9BY43 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
CHMP4AQ9BY43 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
CHMP4AQ9BY43 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC7.37□□□□□ -1.23
CHMP4AQ9BY43 LINC01192-202ENST00000470546 1519 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
CHMP4AQ9BY43 OR2AP1-202ENST00000641114 1548 ntAPPRIS P1 BASIC7.37□□□□□ -1.23
CHMP4AQ9BY43 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC7.37□□□□□ -1.23
CHMP4AQ9BY43 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC7.37□□□□□ -1.23
CHMP4AQ9BY43 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
CHMP4AQ9BY43 OFD1P9Y-201ENST00000417699 1491 ntBASIC7.36□□□□□ -1.23
CHMP4AQ9BY43 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
CHMP4AQ9BY43 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
CHMP4AQ9BY43 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC7.36□□□□□ -1.23
CHMP4AQ9BY43 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC7.36□□□□□ -1.23
CHMP4AQ9BY43 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC7.36□□□□□ -1.23
CHMP4AQ9BY43 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
CHMP4AQ9BY43 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC7.36□□□□□ -1.23
CHMP4AQ9BY43 CLUL1-205ENST00000579494 1742 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
CHMP4AQ9BY43 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC7.36□□□□□ -1.23
CHMP4AQ9BY43 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC7.36□□□□□ -1.23
CHMP4AQ9BY43 TMOD2-201ENST00000249700 9191 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
Retrieved 100 of 98,524 protein–RNA pairs in 75.2 ms