Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 MAPK10-252ENST00000640970 2620 ntTSL 5 BASIC8.14□□□□□ -1.11
COL9A1P20849 AC006299.1-203ENST00000499625 2029 ntTSL 5 BASIC8.13□□□□□ -1.11
COL9A1P20849 ZC3H6-201ENST00000343936 11539 ntAPPRIS P1 TSL 2 BASIC8.13□□□□□ -1.11
COL9A1P20849 TAGAP-203ENST00000367066 3887 ntAPPRIS P4 TSL 1 (best) BASIC8.13□□□□□ -1.11
COL9A1P20849 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC8.13□□□□□ -1.11
COL9A1P20849 ZMIZ1-AS1-201ENST00000428862 2851 ntTSL 5 BASIC8.13□□□□□ -1.11
COL9A1P20849 BDNF-AS-201ENST00000499008 2324 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
COL9A1P20849 UTP23-201ENST00000309822 3699 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
COL9A1P20849 HMGCR-202ENST00000343975 3681 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
COL9A1P20849 ABCA11P-201ENST00000451020 1815 ntTSL 2 BASIC8.13□□□□□ -1.11
COL9A1P20849 ANKRD6-218ENST00000522441 3157 ntAPPRIS ALT1 TSL 2 BASIC8.13□□□□□ -1.11
COL9A1P20849 AP004289.1-201ENST00000436307 2205 ntBASIC8.13□□□□□ -1.11
COL9A1P20849 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC8.13□□□□□ -1.11
COL9A1P20849 RN7SKP250-201ENST00000363924 321 ntBASIC8.13□□□□□ -1.11
COL9A1P20849 RN7SKP48-201ENST00000365031 328 ntBASIC8.13□□□□□ -1.11
COL9A1P20849 RNU6-1032P-201ENST00000384100 107 ntBASIC8.13□□□□□ -1.11
COL9A1P20849 TRAV1-2-201ENST00000390423 402 ntAPPRIS P1 BASIC8.13□□□□□ -1.11
COL9A1P20849 KRT18P52-201ENST00000404956 846 ntBASIC8.13□□□□□ -1.11
COL9A1P20849 AC096644.2-201ENST00000429278 159 ntBASIC8.13□□□□□ -1.11
COL9A1P20849 AL035666.1-201ENST00000446195 348 ntBASIC8.13□□□□□ -1.11
COL9A1P20849 AC009955.1-201ENST00000455896 271 ntTSL 5 BASIC8.13□□□□□ -1.11
COL9A1P20849 AC007731.3-201ENST00000458154 446 ntTSL 5 BASIC8.13□□□□□ -1.11
COL9A1P20849 AC233702.1-201ENST00000482905 502 ntBASIC8.13□□□□□ -1.11
COL9A1P20849 AC124945.1-201ENST00000485133 188 ntBASIC8.13□□□□□ -1.11
COL9A1P20849 RN7SL153P-201ENST00000486501 292 ntBASIC8.13□□□□□ -1.11
COL9A1P20849 SNRPD2P1-201ENST00000489253 354 ntBASIC8.13□□□□□ -1.11
COL9A1P20849 AC139272.1-201ENST00000505516 640 ntBASIC8.13□□□□□ -1.11
COL9A1P20849 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC8.13□□□□□ -1.11
COL9A1P20849 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC8.13□□□□□ -1.11
COL9A1P20849 LINC01950-202ENST00000513273 572 ntTSL 2 BASIC8.13□□□□□ -1.11
COL9A1P20849 HMGB1P19-201ENST00000517578 577 ntBASIC8.13□□□□□ -1.11
COL9A1P20849 CCL26-201ENST00000005180 526 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
COL9A1P20849 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC8.13□□□□□ -1.11
COL9A1P20849 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC8.13□□□□□ -1.11
COL9A1P20849 ARL6IP1P3-201ENST00000524544 560 ntBASIC8.13□□□□□ -1.11
COL9A1P20849 AP002373.2-201ENST00000541631 1060 ntBASIC8.13□□□□□ -1.11
COL9A1P20849 AC007375.1-201ENST00000554513 578 ntBASIC8.13□□□□□ -1.11
COL9A1P20849 AL137100.2-201ENST00000555786 315 ntBASIC8.13□□□□□ -1.11
COL9A1P20849 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC8.13□□□□□ -1.11
COL9A1P20849 AC008770.1-209ENST00000591898 356 ntTSL 3 BASIC8.13□□□□□ -1.11
COL9A1P20849 AC011516.1-201ENST00000599129 180 ntTSL 3 BASIC8.13□□□□□ -1.11
COL9A1P20849 AC008555.7-201ENST00000605008 583 ntBASIC8.13□□□□□ -1.11
COL9A1P20849 HNF1A-AS1-205ENST00000619441 343 ntTSL 3 BASIC8.13□□□□□ -1.11
COL9A1P20849 AL591926.1-201ENST00000620542 217 ntBASIC8.13□□□□□ -1.11
COL9A1P20849 AC211486.4-201ENST00000621495 113 ntBASIC8.13□□□□□ -1.11
COL9A1P20849 MIR6806-201ENST00000622141 64 ntBASIC8.13□□□□□ -1.11
COL9A1P20849 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC8.13□□□□□ -1.11
COL9A1P20849 LINC01206-228ENST00000628718 871 ntTSL 5 BASIC8.13□□□□□ -1.11
COL9A1P20849 PABPC3-201ENST00000281589 3387 ntAPPRIS P1 BASIC8.13□□□□□ -1.11
COL9A1P20849 WDFY4-201ENST00000325239 10079 ntAPPRIS P1 TSL 5 BASIC8.13□□□□□ -1.11
COL9A1P20849 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC8.13□□□□□ -1.11
COL9A1P20849 NEDD4L-201ENST00000256830 2920 ntTSL 5 BASIC8.13□□□□□ -1.11
COL9A1P20849 MAPK10-313ENST00000641405 2469 ntBASIC8.13□□□□□ -1.11
COL9A1P20849 HMMR-201ENST00000353866 2872 ntAPPRIS ALT2 TSL 1 (best) BASIC8.13□□□□□ -1.11
COL9A1P20849 NOS1-202ENST00000338101 4462 ntTSL 5 BASIC8.13□□□□□ -1.11
COL9A1P20849 EFTUD1P2-201ENST00000514817 1603 ntBASIC8.13□□□□□ -1.11
COL9A1P20849 AL512634.1-201ENST00000566873 2432 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
COL9A1P20849 WDR44-203ENST00000371825 4029 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
COL9A1P20849 BACE1-202ENST00000392937 5155 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
COL9A1P20849 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC8.13□□□□□ -1.11
COL9A1P20849 SCYL2-211ENST00000635101 3948 ntTSL 5 BASIC8.13□□□□□ -1.11
COL9A1P20849 AC026124.1-201ENST00000545709 3457 ntTSL 5 BASIC8.13□□□□□ -1.11
COL9A1P20849 IQCH-AS1-203ENST00000559298 5753 ntTSL 5 BASIC8.13□□□□□ -1.11
COL9A1P20849 MAPK10-316ENST00000641430 2285 ntBASIC8.13□□□□□ -1.11
COL9A1P20849 ACVR1-201ENST00000263640 3047 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
COL9A1P20849 PCDH19-201ENST00000255531 7937 ntAPPRIS P3 TSL 1 (best) BASIC8.13□□□□□ -1.11
COL9A1P20849 AC006020.1-201ENST00000420179 1854 ntBASIC8.13□□□□□ -1.11
COL9A1P20849 OR6N1-203ENST00000641846 2640 ntAPPRIS P1 BASIC8.13□□□□□ -1.11
COL9A1P20849 LINC00282-202ENST00000627246 4008 ntAPPRIS P5 TSL 2 BASIC8.13□□□□□ -1.11
COL9A1P20849 TTLL9-206ENST00000535842 3261 ntAPPRIS P2 TSL 5 BASIC8.12□□□□□ -1.11
COL9A1P20849 ZNF334-206ENST00000625284 2495 ntAPPRIS ALT2 TSL 2 BASIC8.12□□□□□ -1.11
COL9A1P20849 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC8.12□□□□□ -1.11
COL9A1P20849 ERG-204ENST00000398907 4809 ntTSL 5 BASIC8.12□□□□□ -1.11
COL9A1P20849 CREB1-201ENST00000353267 7588 ntAPPRIS P1 TSL 1 (best) BASIC8.12□□□□□ -1.11
COL9A1P20849 XRCC5-202ENST00000392133 3761 ntAPPRIS P1 TSL 5 BASIC8.12□□□□□ -1.11
COL9A1P20849 CSNK2A1-201ENST00000217244 4416 ntAPPRIS P1 TSL 1 (best) BASIC8.12□□□□□ -1.11
COL9A1P20849 BUB1B-201ENST00000287598 3725 ntAPPRIS P1 TSL 1 (best) BASIC8.12□□□□□ -1.11
COL9A1P20849 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC8.12□□□□□ -1.11
COL9A1P20849 UACA-203ENST00000539319 4026 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
COL9A1P20849 TRIM49D1-201ENST00000420869 1651 ntAPPRIS P2 TSL 5 BASIC8.12□□□□□ -1.11
COL9A1P20849 TRIM49D2-202ENST00000623787 1651 ntAPPRIS P1 TSL 5 BASIC8.12□□□□□ -1.11
COL9A1P20849 RBM12B-202ENST00000517700 6001 ntAPPRIS ALT2 TSL 1 (best) BASIC8.12□□□□□ -1.11
COL9A1P20849 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC8.12□□□□□ -1.11
COL9A1P20849 CARF-212ENST00000434998 1955 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
COL9A1P20849 NCALD-201ENST00000220931 3283 ntAPPRIS P1 TSL 1 (best) BASIC8.12□□□□□ -1.11
COL9A1P20849 AL355306.2-202ENST00000634380 2281 ntTSL 5 BASIC8.12□□□□□ -1.11
COL9A1P20849 RNU1-16P-201ENST00000365477 164 ntBASIC8.12□□□□□ -1.11
COL9A1P20849 RNU6-108P-201ENST00000365558 107 ntBASIC8.12□□□□□ -1.11
COL9A1P20849 CBWD5-205ENST00000377395 1143 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
COL9A1P20849 SNORD116-23-201ENST00000384645 92 ntBASIC8.12□□□□□ -1.11
COL9A1P20849 SNORA19-201ENST00000384737 128 ntBASIC8.12□□□□□ -1.11
COL9A1P20849 RPS20P2-201ENST00000402520 389 ntBASIC8.12□□□□□ -1.11
COL9A1P20849 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC8.12□□□□□ -1.11
COL9A1P20849 BX284668.3-201ENST00000414128 882 ntTSL 5 BASIC8.12□□□□□ -1.11
COL9A1P20849 AL451164.1-201ENST00000417149 390 ntTSL 3 BASIC8.12□□□□□ -1.11
COL9A1P20849 AC104837.2-201ENST00000427236 424 ntBASIC8.12□□□□□ -1.11
COL9A1P20849 AC099796.1-201ENST00000433377 683 ntTSL 3 BASIC8.12□□□□□ -1.11
COL9A1P20849 AC092601.1-201ENST00000444526 383 ntBASIC8.12□□□□□ -1.11
COL9A1P20849 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC8.12□□□□□ -1.11
COL9A1P20849 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC8.12□□□□□ -1.11
Retrieved 100 of 98,524 protein–RNA pairs in 93.2 ms