Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 SLC9A9-AS2-201ENST00000490153 327 ntTSL 5 BASIC4.05□□□□□ -1.76
HLA-DQA1P01909 AC106822.1-201ENST00000502647 526 ntBASIC4.05□□□□□ -1.76
HLA-DQA1P01909 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC4.05□□□□□ -1.76
HLA-DQA1P01909 AC113382.2-201ENST00000506911 646 ntTSL 3 BASIC4.05□□□□□ -1.76
HLA-DQA1P01909 AC097534.1-201ENST00000507803 521 ntTSL 4 BASIC4.05□□□□□ -1.76
HLA-DQA1P01909 LINC01088-205ENST00000509088 756 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
HLA-DQA1P01909 CR383658.1-201ENST00000514609 734 ntBASIC4.05□□□□□ -1.76
HLA-DQA1P01909 AC084880.3-201ENST00000535921 541 ntTSL 4 BASIC4.05□□□□□ -1.76
HLA-DQA1P01909 MRE11-209ENST00000540013 1212 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
HLA-DQA1P01909 TCEANC-205ENST00000544987 1146 ntTSL 5 BASIC4.05□□□□□ -1.76
HLA-DQA1P01909 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
HLA-DQA1P01909 AC002310.3-201ENST00000569728 723 ntBASIC4.05□□□□□ -1.76
HLA-DQA1P01909 AC007431.2-201ENST00000577189 563 ntTSL 2 BASIC4.05□□□□□ -1.76
HLA-DQA1P01909 AP005901.4-201ENST00000577336 569 ntBASIC4.05□□□□□ -1.76
HLA-DQA1P01909 AC093484.5-201ENST00000585048 304 ntTSL 3 BASIC4.05□□□□□ -1.76
HLA-DQA1P01909 LINC01533-204ENST00000590719 435 ntTSL 5 BASIC4.05□□□□□ -1.76
HLA-DQA1P01909 AC097505.1-201ENST00000610199 565 ntBASIC4.05□□□□□ -1.76
HLA-DQA1P01909 Metazoa_SRP.35-201ENST00000611402 288 ntBASIC4.05□□□□□ -1.76
HLA-DQA1P01909 uc_338.31-201ENST00000615595 186 ntBASIC4.05□□□□□ -1.76
HLA-DQA1P01909 ELSPBP1-206ENST00000619003 893 ntAPPRIS ALT2 TSL 5 BASIC4.05□□□□□ -1.76
HLA-DQA1P01909 SSX4B-202ENST00000619890 1092 ntTSL 5 BASIC4.05□□□□□ -1.76
HLA-DQA1P01909 SSX4-202ENST00000620320 1092 ntTSL 5 BASIC4.05□□□□□ -1.76
HLA-DQA1P01909 MIR6806-201ENST00000622141 64 ntBASIC4.05□□□□□ -1.76
HLA-DQA1P01909 AC073592.6-201ENST00000624271 415 ntBASIC4.05□□□□□ -1.76
HLA-DQA1P01909 LINC02246-206ENST00000630211 712 ntTSL 5 BASIC4.05□□□□□ -1.76
HLA-DQA1P01909 CASC19-274ENST00000642018 970 ntBASIC4.05□□□□□ -1.76
HLA-DQA1P01909 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
HLA-DQA1P01909 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC4.05□□□□□ -1.76
HLA-DQA1P01909 TCF12-205ENST00000537840 1598 ntTSL 2 BASIC4.05□□□□□ -1.76
HLA-DQA1P01909 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC4.05□□□□□ -1.76
HLA-DQA1P01909 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC4.05□□□□□ -1.76
HLA-DQA1P01909 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC4.04□□□□□ -1.76
HLA-DQA1P01909 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC4.04□□□□□ -1.76
HLA-DQA1P01909 PWAR1-201ENST00000624188 2414 ntBASIC4.04□□□□□ -1.76
HLA-DQA1P01909 EIF3E-206ENST00000519030 1324 ntTSL 5 BASIC4.04□□□□□ -1.76
HLA-DQA1P01909 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC4.04□□□□□ -1.76
HLA-DQA1P01909 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC4.04□□□□□ -1.76
HLA-DQA1P01909 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC4.04□□□□□ -1.76
HLA-DQA1P01909 HSPB11-202ENST00000371376 765 ntTSL 3 BASIC4.04□□□□□ -1.76
HLA-DQA1P01909 TRAV1-2-201ENST00000390423 402 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
HLA-DQA1P01909 AC002524.1-201ENST00000411687 547 ntBASIC4.04□□□□□ -1.76
HLA-DQA1P01909 RPSAP35-201ENST00000413753 818 ntBASIC4.04□□□□□ -1.76
HLA-DQA1P01909 EIF4A1P1-201ENST00000420241 934 ntBASIC4.04□□□□□ -1.76
HLA-DQA1P01909 AL445224.1-201ENST00000420595 737 ntTSL 5 BASIC4.04□□□□□ -1.76
HLA-DQA1P01909 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
HLA-DQA1P01909 AC124944.2-201ENST00000429866 1242 ntBASIC4.04□□□□□ -1.76
HLA-DQA1P01909 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC4.04□□□□□ -1.76
HLA-DQA1P01909 MRPL35P2-201ENST00000448009 511 ntBASIC4.04□□□□□ -1.76
HLA-DQA1P01909 PPIAP7-201ENST00000454070 489 ntBASIC4.04□□□□□ -1.76
HLA-DQA1P01909 AC009963.3-201ENST00000458090 486 ntBASIC4.04□□□□□ -1.76
HLA-DQA1P01909 AP000942.1-201ENST00000463969 747 ntBASIC4.04□□□□□ -1.76
HLA-DQA1P01909 AC104339.1-201ENST00000465478 348 ntBASIC4.04□□□□□ -1.76
HLA-DQA1P01909 AC092865.4-201ENST00000477936 615 ntBASIC4.04□□□□□ -1.76
HLA-DQA1P01909 RN7SL570P-201ENST00000484405 292 ntBASIC4.04□□□□□ -1.76
HLA-DQA1P01909 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC4.04□□□□□ -1.76
HLA-DQA1P01909 ARL4AP1-201ENST00000503220 705 ntBASIC4.04□□□□□ -1.76
HLA-DQA1P01909 LINC02513-201ENST00000503465 500 ntTSL 2 BASIC4.04□□□□□ -1.76
HLA-DQA1P01909 AC113398.2-201ENST00000507630 558 ntBASIC4.04□□□□□ -1.76
HLA-DQA1P01909 MTCO3P42-201ENST00000509488 518 ntBASIC4.04□□□□□ -1.76
HLA-DQA1P01909 SPINK9-202ENST00000511717 604 ntAPPRIS ALT2 TSL 5 BASIC4.04□□□□□ -1.76
HLA-DQA1P01909 PRMT5P1-201ENST00000514351 598 ntBASIC4.04□□□□□ -1.76
HLA-DQA1P01909 MTCO3P39-201ENST00000514812 518 ntBASIC4.04□□□□□ -1.76
HLA-DQA1P01909 RN7SKP183-201ENST00000517169 324 ntBASIC4.04□□□□□ -1.76
HLA-DQA1P01909 AC131254.2-201ENST00000521908 550 ntTSL 3 BASIC4.04□□□□□ -1.76
HLA-DQA1P01909 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC4.04□□□□□ -1.76
HLA-DQA1P01909 AP000620.1-201ENST00000527147 504 ntBASIC4.04□□□□□ -1.76
HLA-DQA1P01909 ATXN3-215ENST00000532032 1191 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
HLA-DQA1P01909 AC022509.3-201ENST00000535914 436 ntTSL 3 BASIC4.04□□□□□ -1.76
HLA-DQA1P01909 AC009396.2-201ENST00000555954 700 ntTSL 3 BASIC4.04□□□□□ -1.76
HLA-DQA1P01909 C15orf41-204ENST00000562877 764 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
HLA-DQA1P01909 MIR4260-201ENST00000583107 67 ntBASIC4.04□□□□□ -1.76
HLA-DQA1P01909 SNORD91B-202ENST00000608459 222 ntBASIC4.04□□□□□ -1.76
HLA-DQA1P01909 AP005212.4-201ENST00000614206 710 ntBASIC4.04□□□□□ -1.76
HLA-DQA1P01909 AC004801.6-201ENST00000616571 978 ntBASIC4.04□□□□□ -1.76
HLA-DQA1P01909 LINC02536-201ENST00000625799 625 ntTSL 3 BASIC4.04□□□□□ -1.76
HLA-DQA1P01909 AC073869.8-201ENST00000641806 335 ntBASIC4.04□□□□□ -1.76
HLA-DQA1P01909 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
HLA-DQA1P01909 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC4.04□□□□□ -1.76
HLA-DQA1P01909 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.04□□□□□ -1.76
HLA-DQA1P01909 AC021205.3-201ENST00000609680 1709 ntTSL 3 BASIC4.04□□□□□ -1.76
HLA-DQA1P01909 CASC8-203ENST00000502082 1420 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
HLA-DQA1P01909 CD164-207ENST00000504373 1402 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
HLA-DQA1P01909 UGP2-203ENST00000445915 1955 ntTSL 2 BASIC4.03□□□□□ -1.76
HLA-DQA1P01909 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC4.03□□□□□ -1.76
HLA-DQA1P01909 AFP-201ENST00000226359 1914 ntTSL 5 BASIC4.03□□□□□ -1.76
HLA-DQA1P01909 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
HLA-DQA1P01909 AC107068.1-201ENST00000563286 4218 ntBASIC4.03□□□□□ -1.76
HLA-DQA1P01909 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
HLA-DQA1P01909 IQCM-205ENST00000636414 1844 ntAPPRIS ALT2 TSL 5 BASIC4.03□□□□□ -1.76
HLA-DQA1P01909 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
HLA-DQA1P01909 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
HLA-DQA1P01909 PSMA3-201ENST00000216455 970 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
HLA-DQA1P01909 RN7SKP171-201ENST00000364417 303 ntBASIC4.03□□□□□ -1.76
HLA-DQA1P01909 CDC123-202ENST00000378900 933 ntTSL 5 BASIC4.03□□□□□ -1.76
HLA-DQA1P01909 IL6-203ENST00000401651 539 ntTSL 2 BASIC4.03□□□□□ -1.76
HLA-DQA1P01909 AL009179.1-201ENST00000406085 265 ntBASIC4.03□□□□□ -1.76
HLA-DQA1P01909 RPA3-204ENST00000406109 434 ntTSL 3 BASIC4.03□□□□□ -1.76
HLA-DQA1P01909 MIR1275-201ENST00000408770 80 ntBASIC4.03□□□□□ -1.76
HLA-DQA1P01909 AL035422.1-201ENST00000414193 397 ntBASIC4.03□□□□□ -1.76
HLA-DQA1P01909 MARK2P12-201ENST00000420129 585 ntBASIC4.03□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 81.8 ms