Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC092958.1-201ENST00000467198 2569 ntTSL 2 BASIC8.67□□□□□ -1.02
CUX1P39880 CLCC1-204ENST00000369968 4151 ntTSL 5 BASIC8.67□□□□□ -1.02
CUX1P39880 SETX-201ENST00000224140 11100 ntAPPRIS P2 TSL 1 (best) BASIC8.67□□□□□ -1.02
CUX1P39880 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC8.67□□□□□ -1.02
CUX1P39880 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC8.66□□□□□ -1.02
CUX1P39880 UNC13B-209ENST00000635942 14550 ntAPPRIS ALT2 TSL 5 BASIC8.66□□□□□ -1.02
CUX1P39880 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
CUX1P39880 U3.28-201ENST00000391249 210 ntBASIC8.66□□□□□ -1.02
CUX1P39880 SNORA77-201ENST00000408716 125 ntBASIC8.66□□□□□ -1.02
CUX1P39880 RNU2-50P-201ENST00000410494 143 ntBASIC8.66□□□□□ -1.02
CUX1P39880 LINC01133-202ENST00000443364 1266 ntTSL 5 BASIC8.66□□□□□ -1.02
CUX1P39880 RPL7P41-201ENST00000485823 957 ntBASIC8.66□□□□□ -1.02
CUX1P39880 HPRT1P1-201ENST00000509498 657 ntBASIC8.66□□□□□ -1.02
CUX1P39880 LINC02265-201ENST00000510551 957 ntTSL 2 BASIC8.66□□□□□ -1.02
CUX1P39880 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC8.66□□□□□ -1.02
CUX1P39880 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC8.66□□□□□ -1.02
CUX1P39880 AP005230.1-203ENST00000582086 887 ntTSL 2 BASIC8.66□□□□□ -1.02
CUX1P39880 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC8.66□□□□□ -1.02
CUX1P39880 AC211433.1-206ENST00000595409 733 ntTSL 5 BASIC8.66□□□□□ -1.02
CUX1P39880 AC020910.2-201ENST00000603635 610 ntBASIC8.66□□□□□ -1.02
CUX1P39880 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
CUX1P39880 RIPK1-202ENST00000380409 3864 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
CUX1P39880 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC8.66□□□□□ -1.02
CUX1P39880 RUFY3-202ENST00000381006 3098 ntAPPRIS P1 TSL 5 BASIC8.66□□□□□ -1.02
CUX1P39880 RAG1-201ENST00000299440 6564 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
CUX1P39880 GAPVD1-203ENST00000312123 4320 ntAPPRIS ALT1 TSL 1 (best) BASIC8.66□□□□□ -1.02
CUX1P39880 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC8.66□□□□□ -1.02
CUX1P39880 AL356317.1-201ENST00000396110 1436 ntBASIC8.66□□□□□ -1.02
CUX1P39880 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC8.65□□□□□ -1.02
CUX1P39880 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
CUX1P39880 CASC19-243ENST00000641588 1546 ntBASIC8.65□□□□□ -1.02
CUX1P39880 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
CUX1P39880 CCDC77-201ENST00000239830 2371 ntAPPRIS P3 TSL 2 BASIC8.65□□□□□ -1.02
CUX1P39880 U3.10-201ENST00000364459 214 ntBASIC8.65□□□□□ -1.02
CUX1P39880 ATP6V0E1P2-201ENST00000441771 245 ntBASIC8.65□□□□□ -1.02
CUX1P39880 AL137845.2-201ENST00000444292 988 ntBASIC8.65□□□□□ -1.02
CUX1P39880 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC8.65□□□□□ -1.02
CUX1P39880 AC020898.1-201ENST00000474167 787 ntBASIC8.65□□□□□ -1.02
CUX1P39880 AC010350.1-201ENST00000504908 231 ntBASIC8.65□□□□□ -1.02
CUX1P39880 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
CUX1P39880 PHACTR2P1-202ENST00000636592 773 ntTSL 5 BASIC8.65□□□□□ -1.02
CUX1P39880 Z98755.1-201ENST00000407015 1384 ntBASIC8.65□□□□□ -1.02
CUX1P39880 RUBCNL-205ENST00000389908 3956 ntAPPRIS P3 TSL 2 BASIC8.65□□□□□ -1.02
CUX1P39880 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC8.65□□□□□ -1.02
CUX1P39880 ITPR1-205ENST00000456211 9717 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
CUX1P39880 CHEK1-216ENST00000534070 3513 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
CUX1P39880 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC8.65□□□□□ -1.02
CUX1P39880 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC8.65□□□□□ -1.03
CUX1P39880 MROH9-201ENST00000367758 2227 ntAPPRIS P3 TSL 1 (best) BASIC8.65□□□□□ -1.03
CUX1P39880 AC010928.1-201ENST00000592477 1447 ntBASIC8.65□□□□□ -1.03
CUX1P39880 MYPN-204ENST00000540630 5707 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.03
CUX1P39880 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC8.65□□□□□ -1.03
CUX1P39880 ADTRP-201ENST00000229583 891 ntTSL 2 BASIC8.64□□□□□ -1.03
CUX1P39880 NUP37-201ENST00000251074 1203 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
CUX1P39880 COX7B2-202ENST00000396533 617 ntAPPRIS P2 TSL 1 (best) BASIC8.64□□□□□ -1.03
CUX1P39880 DNAJA1P3-201ENST00000399417 1194 ntBASIC8.64□□□□□ -1.03
CUX1P39880 AC004690.1-201ENST00000418216 328 ntBASIC8.64□□□□□ -1.03
CUX1P39880 PRPF38AP2-201ENST00000438179 851 ntBASIC8.64□□□□□ -1.03
CUX1P39880 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC8.64□□□□□ -1.03
CUX1P39880 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC8.64□□□□□ -1.03
CUX1P39880 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC8.64□□□□□ -1.03
CUX1P39880 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC8.64□□□□□ -1.03
CUX1P39880 AL049875.1-201ENST00000554328 582 ntTSL 4 BASIC8.64□□□□□ -1.03
CUX1P39880 AC055855.2-201ENST00000565993 500 ntTSL 2 BASIC8.64□□□□□ -1.03
CUX1P39880 AL162431.4-201ENST00000604674 411 ntBASIC8.64□□□□□ -1.03
CUX1P39880 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC8.64□□□□□ -1.03
CUX1P39880 BAALC-AS1-201ENST00000499522 1353 ntTSL 5 BASIC8.64□□□□□ -1.03
CUX1P39880 CHRM5-201ENST00000383263 5410 ntAPPRIS P1 TSL 2 BASIC8.64□□□□□ -1.03
CUX1P39880 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
CUX1P39880 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC8.64□□□□□ -1.03
CUX1P39880 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
CUX1P39880 FRMD4B-210ENST00000478263 3761 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
CUX1P39880 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
CUX1P39880 ARRDC3-201ENST00000265138 4188 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
CUX1P39880 SPATA31D5P-202ENST00000527857 4863 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
CUX1P39880 AURKA-208ENST00000395915 2114 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
CUX1P39880 AL021877.2-201ENST00000624442 10684 ntBASIC8.64□□□□□ -1.03
CUX1P39880 CTNND1-236ENST00000533667 4990 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
CUX1P39880 ADGRE1-202ENST00000312053 3128 ntAPPRIS P3 TSL 1 (best) BASIC8.64□□□□□ -1.03
CUX1P39880 SLC35E3-202ENST00000398004 17791 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
CUX1P39880 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC8.64□□□□□ -1.03
CUX1P39880 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC8.64□□□□□ -1.03
CUX1P39880 AL354771.1-201ENST00000452178 602 ntTSL 5 BASIC8.64□□□□□ -1.03
CUX1P39880 AC006967.1-201ENST00000467608 589 ntBASIC8.64□□□□□ -1.03
CUX1P39880 AC011005.3-201ENST00000491624 395 ntBASIC8.64□□□□□ -1.03
CUX1P39880 AC073023.1-201ENST00000522896 773 ntTSL 5 BASIC8.64□□□□□ -1.03
CUX1P39880 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC8.64□□□□□ -1.03
CUX1P39880 DIAPH2-AS1-204ENST00000579945 974 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
CUX1P39880 TEX41-238ENST00000604253 709 ntTSL 5 BASIC8.64□□□□□ -1.03
CUX1P39880 SMARCA2-231ENST00000634931 939 ntTSL 5 BASIC8.64□□□□□ -1.03
CUX1P39880 OR1S2-202ENST00000641683 941 ntAPPRIS P1 BASIC8.64□□□□□ -1.03
CUX1P39880 ZBTB34-202ENST00000373452 6528 ntAPPRIS P1 BASIC8.64□□□□□ -1.03
CUX1P39880 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC8.64□□□□□ -1.03
CUX1P39880 DAZ2-204ENST00000382431 3637 ntAPPRIS ALT2 TSL 1 (best) BASIC8.63□□□□□ -1.03
CUX1P39880 LINC00630-201ENST00000416381 2012 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
CUX1P39880 AC006210.2-201ENST00000367074 1545 ntBASIC8.63□□□□□ -1.03
CUX1P39880 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
CUX1P39880 PRDM2-201ENST00000235372 7957 ntAPPRIS P4 TSL 1 (best) BASIC8.63□□□□□ -1.03
CUX1P39880 N4BP2L2-IT2-201ENST00000629393 4890 ntBASIC8.63□□□□□ -1.03
CUX1P39880 TMEM133-201ENST00000303130 1953 ntAPPRIS P1 BASIC8.63□□□□□ -1.03
Retrieved 100 of 98,524 protein–RNA pairs in 89 ms