Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC8.12□□□□□ -1.11
VPS9D1Q9Y2B5 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC8.12□□□□□ -1.11
VPS9D1Q9Y2B5 MTIF2-203ENST00000394600 2221 ntAPPRIS P1 TSL 2 BASIC8.12□□□□□ -1.11
VPS9D1Q9Y2B5 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC8.12□□□□□ -1.11
VPS9D1Q9Y2B5 GCNT2-202ENST00000316170 4381 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
VPS9D1Q9Y2B5 PCBP1-AS1-243ENST00000458698 1893 ntTSL 3 BASIC8.12□□□□□ -1.11
VPS9D1Q9Y2B5 NOTCH2-206ENST00000579475 2954 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
VPS9D1Q9Y2B5 PDE4DIP-205ENST00000369354 8262 ntAPPRIS ALT2 TSL 1 (best) BASIC8.12□□□□□ -1.11
VPS9D1Q9Y2B5 ZNF43-205ENST00000594012 5584 ntAPPRIS ALT2 TSL 2 BASIC8.12□□□□□ -1.11
VPS9D1Q9Y2B5 ABLIM3-207ENST00000508983 2011 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
VPS9D1Q9Y2B5 AC114546.3-201ENST00000623582 1734 ntBASIC8.12□□□□□ -1.11
VPS9D1Q9Y2B5 ALPK1-201ENST00000177648 4537 ntAPPRIS P3 TSL 1 (best) BASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 DDX24-205ENST00000555054 2769 ntTSL 5 BASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 GABRP-201ENST00000265294 3310 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 ITPR1-203ENST00000357086 9762 ntAPPRIS P3 TSL 1 (best) BASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 ZNF268-213ENST00000542986 3773 ntTSL 5 BASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 MAPK10-204ENST00000395157 2665 ntTSL 5 BASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 FGD4-202ENST00000427716 8242 ntAPPRIS P1 TSL 2 BASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 MFSD4BP1-201ENST00000513330 1552 ntBASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 MATR3-232ENST00000502929 4373 ntTSL 2 BASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 RABGEF1-203ENST00000439720 3065 ntTSL 2 BASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 OR2G2-201ENST00000320065 954 ntAPPRIS P1 BASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 RNU6-774P-201ENST00000363238 107 ntBASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 RNU4-2-201ENST00000365668 141 ntBASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 THEM5-201ENST00000368817 984 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 RPL24-201ENST00000394077 623 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 RPL23A-203ENST00000394938 688 ntTSL 2 BASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 RPL23AP32-201ENST00000395315 459 ntBASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 UGT1A6-203ENST00000406651 785 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 RPL31P52-201ENST00000407532 367 ntBASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 MIR548F5-201ENST00000408421 86 ntBASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 RNU2-9P-201ENST00000410194 145 ntBASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 RPE-204ENST00000411934 792 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 SPRY4-AS1-201ENST00000414314 521 ntTSL 3 BASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 AC127526.1-201ENST00000417526 366 ntBASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 AC139712.2-201ENST00000424302 339 ntBASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 AP001324.1-201ENST00000428553 399 ntBASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 AL731567.1-201ENST00000435635 462 ntTSL 2 BASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 AL590094.1-203ENST00000435649 828 ntTSL 5 BASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 DNAJC19P5-201ENST00000443295 316 ntBASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 AL121871.1-201ENST00000443413 436 ntBASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 RPL26P30-201ENST00000453533 435 ntBASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 AC008080.2-201ENST00000455149 577 ntTSL 4 BASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 NDUFB11P1-201ENST00000455818 465 ntBASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 BTF3P5-201ENST00000457252 467 ntBASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 RNU7-63P-201ENST00000459054 62 ntBASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 RN7SL706P-201ENST00000460079 292 ntBASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 RPS20P21-201ENST00000466859 343 ntBASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 RN7SL621P-201ENST00000472565 299 ntBASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 CSF2RA-217ENST00000494969 489 ntTSL 5 BASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 SNRPCP8-201ENST00000514820 211 ntBASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 AC024022.1-203ENST00000515392 478 ntTSL 3 BASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 AC087854.1-201ENST00000519706 414 ntBASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 MRPS16P1-201ENST00000523462 412 ntBASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 OR5D2P-201ENST00000524390 911 ntBASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 AC055716.1-201ENST00000550077 495 ntBASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 AC004241.1-203ENST00000552502 460 ntTSL 3 BASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 AL355102.4-201ENST00000553638 738 ntTSL 2 BASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 AC090287.1-201ENST00000578374 291 ntBASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 GATA6-AS1-201ENST00000579431 481 ntTSL 3 BASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 AC090358.1-201ENST00000579862 852 ntTSL 3 BASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 PCBP1-AS1-244ENST00000594376 1197 ntTSL 5 BASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 AL133338.2-201ENST00000604292 736 ntBASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 AC104687.2-201ENST00000604442 342 ntBASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 AC004839.1-201ENST00000610269 501 ntBASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 AC084876.1-201ENST00000612793 641 ntBASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 AL117372.1-201ENST00000613711 459 ntTSL 4 BASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 AL031772.1-216ENST00000619494 697 ntTSL 5 BASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 FTH1-212ENST00000620041 825 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 AC243312.2-201ENST00000623340 601 ntBASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 LINC01176-202ENST00000628121 716 ntTSL 3 BASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 DLG2-211ENST00000426717 5927 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 OLFM5P-201ENST00000411807 1478 ntBASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 ABCB4-203ENST00000359206 3923 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 SLC16A4-206ENST00000472422 2420 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 HLTF-203ENST00000465259 5306 ntAPPRIS ALT1 TSL 1 (best) BASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 RPS17-209ENST00000561157 1909 ntTSL 2 BASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 PLRG1-201ENST00000302078 1673 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 NPIPB15-201ENST00000429990 1428 ntAPPRIS P1 TSL 5 BASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 AC105383.1-202ENST00000505289 2820 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 GCSAML-211ENST00000623578 3959 ntAPPRIS ALT2 TSL 4 BASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 SUPT6H-201ENST00000314616 6523 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 EFCAB7-201ENST00000371088 2313 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 LINC02111-201ENST00000505158 2312 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 AC012668.3-202ENST00000417485 1642 ntTSL 5 BASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 AC090771.1-201ENST00000585803 1618 ntBASIC8.11□□□□□ -1.11
VPS9D1Q9Y2B5 RIPOR2-208ENST00000613507 5539 ntAPPRIS P4 TSL 5 BASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 AL445231.1-201ENST00000445523 1814 ntTSL 2 BASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 IQCM-205ENST00000636414 1844 ntAPPRIS ALT2 TSL 5 BASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 LINC00561-201ENST00000565815 2738 ntBASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 DCX-208ENST00000636035 9269 ntAPPRIS ALT1 TSL 2 BASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 ASNSP3-201ENST00000451989 1306 ntBASIC8.1□□□□□ -1.11
Retrieved 100 of 98,524 protein–RNA pairs in 161.8 ms