Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 ZNF90P1-201ENST00000480493 1951 ntBASIC7.59□□□□□ -1.2
NPAS3Q8IXF0 LINC02431-202ENST00000505329 1788 ntTSL 1 (best) BASIC7.59□□□□□ -1.2
NPAS3Q8IXF0 MTPN-201ENST00000393085 3738 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 THAP12P8-201ENST00000447914 2115 ntBASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 FRMD7-203ENST00000464296 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 CSDE1-214ENST00000530886 3459 ntTSL 5 BASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 EFCAB6-203ENST00000396231 4424 ntAPPRIS ALT2 TSL 1 (best) BASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 OCLN-205ENST00000538151 5391 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 VTI1A-202ENST00000432306 1738 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 TAF1-203ENST00000373790 7629 ntAPPRIS ALT2 TSL 1 (best) BASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 AL590763.1-201ENST00000398297 1545 ntBASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 GPM6A-202ENST00000393658 2821 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 ZFX-204ENST00000379188 7513 ntTSL 5 BASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 FARSB-201ENST00000281828 3369 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 PPFIA2-202ENST00000407050 3903 ntTSL 2 BASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 ZNF225-201ENST00000262894 4482 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 VWA3A-202ENST00000389398 4600 ntAPPRIS P2 TSL 5 BASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 AC090198.1-201ENST00000518639 2355 ntTSL 5 BASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 TTI1-201ENST00000373447 3825 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 TOMM6-202ENST00000398884 637 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 Z97832.1-201ENST00000402490 328 ntBASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 AL590143.1-201ENST00000405071 138 ntBASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 MIR1302-3-201ENST00000408128 138 ntBASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 RNU6-847P-201ENST00000411115 108 ntBASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 AL157932.1-201ENST00000413246 363 ntTSL 3 BASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 AC007389.1-203ENST00000414811 556 ntTSL 4 BASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 AIMP1P1-201ENST00000418670 937 ntBASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 HNRNPA1P30-201ENST00000424329 751 ntTSL 3 BASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 PUDPP2-201ENST00000431423 643 ntBASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 FTLP17-201ENST00000432567 525 ntBASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 AL445465.1-204ENST00000440220 447 ntTSL 3 BASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 AC009237.4-201ENST00000441078 238 ntBASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 RPS27P5-201ENST00000444247 244 ntBASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 GTF2IP12-201ENST00000456547 356 ntBASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 OR13C1P-201ENST00000457612 963 ntBASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 VN1R6P-201ENST00000458417 907 ntBASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 NDUFB2-210ENST00000475276 539 ntTSL 4 BASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 SNRPCP11-201ENST00000492453 205 ntBASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 AC104071.1-201ENST00000505636 602 ntTSL 3 BASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 HSPE1P10-201ENST00000508631 558 ntBASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 LINC02506-201ENST00000513211 734 ntTSL 3 BASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 AC008429.2-201ENST00000523057 864 ntBASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 ALG9-IT1-201ENST00000531305 684 ntTSL 3 BASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 RPL27A-211ENST00000532359 406 ntTSL 2 BASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 RERG-AS1-201ENST00000541243 337 ntTSL 2 BASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 AC092747.2-201ENST00000545069 983 ntBASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 AL135978.1-201ENST00000553618 1266 ntBASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 HIF1AP1-201ENST00000553642 175 ntBASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 AC007424.1-203ENST00000554613 687 ntBASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 AL031846.1-201ENST00000560933 314 ntBASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 AC104581.3-201ENST00000573621 348 ntAPPRIS P1 TSL 5 BASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 AC087501.3-201ENST00000576477 513 ntTSL 5 BASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 SNRPGP17-201ENST00000603780 214 ntBASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 AC091488.1-201ENST00000604239 660 ntBASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 PCBP1-AS1-230ENST00000439670 2180 ntTSL 2 BASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 PTBP3-204ENST00000374255 3413 ntAPPRIS P3 TSL 5 BASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 MYO6-202ENST00000369977 5597 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 BRCA1-221ENST00000493795 5732 ntTSL 5 BASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 WNK1-220ENST00000574564 1401 ntBASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 OSGIN2-201ENST00000297438 4209 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 ZNF544-216ENST00000600044 2784 ntAPPRIS ALT2 TSL 4 BASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 FCGR3A-201ENST00000367967 2086 ntAPPRIS P1 TSL 3 BASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 PIAS1-201ENST00000249636 8115 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 GABRQ-201ENST00000598523 6172 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
NPAS3Q8IXF0 TRIM16-212ENST00000578237 3206 ntAPPRIS P1 TSL 5 BASIC7.57□□□□□ -1.2
NPAS3Q8IXF0 SERPINA6-201ENST00000341584 1534 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
NPAS3Q8IXF0 CD200R1-201ENST00000295863 1692 ntTSL 2 BASIC7.57□□□□□ -1.2
NPAS3Q8IXF0 HSP90AA2P-201ENST00000530115 2196 ntBASIC7.57□□□□□ -1.2
NPAS3Q8IXF0 RALYL-204ENST00000518566 2682 ntAPPRIS ALT2 TSL 2 BASIC7.57□□□□□ -1.2
NPAS3Q8IXF0 ZEB2-227ENST00000627532 9541 ntAPPRIS P2 TSL 1 (best) BASIC7.57□□□□□ -1.2
NPAS3Q8IXF0 EFHC1-233ENST00000637353 3829 ntTSL 5 BASIC7.57□□□□□ -1.2
NPAS3Q8IXF0 RSPH4A-201ENST00000229554 2825 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
NPAS3Q8IXF0 CPM-202ENST00000546373 2116 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
NPAS3Q8IXF0 CFLAR-201ENST00000309955 14672 ntAPPRIS P3 TSL 1 (best) BASIC7.57□□□□□ -1.2
NPAS3Q8IXF0 FBXL13-208ENST00000456695 1605 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
NPAS3Q8IXF0 EFTUD1P2-201ENST00000514817 1603 ntBASIC7.57□□□□□ -1.2
NPAS3Q8IXF0 UEVLD-202ENST00000320750 1799 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
NPAS3Q8IXF0 UAP1-203ENST00000367925 2069 ntAPPRIS ALT1 TSL 5 BASIC7.57□□□□□ -1.2
NPAS3Q8IXF0 PUM1-205ENST00000424085 4631 ntTSL 5 BASIC7.57□□□□□ -1.2
NPAS3Q8IXF0 OR52H1-201ENST00000322653 1057 ntAPPRIS P1 BASIC7.57□□□□□ -1.2
NPAS3Q8IXF0 RPL7-201ENST00000352983 1101 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
NPAS3Q8IXF0 ESD-201ENST00000378697 1079 ntTSL 5 BASIC7.57□□□□□ -1.2
NPAS3Q8IXF0 RNU6-639P-201ENST00000384074 107 ntBASIC7.57□□□□□ -1.2
NPAS3Q8IXF0 RNU6-209P-201ENST00000384118 107 ntBASIC7.57□□□□□ -1.2
NPAS3Q8IXF0 SNORA40.3-201ENST00000390964 122 ntBASIC7.57□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 106.8 ms