Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC3.98□□□□□ -1.77
FOXA3P55318 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC3.98□□□□□ -1.77
FOXA3P55318 OR4D11-201ENST00000313253 936 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
FOXA3P55318 MTHFD2P5-201ENST00000320415 844 ntBASIC3.98□□□□□ -1.77
FOXA3P55318 AC117402.1-202ENST00000383686 820 ntTSL 2 BASIC3.98□□□□□ -1.77
FOXA3P55318 MIR431-201ENST00000385266 114 ntBASIC3.98□□□□□ -1.77
FOXA3P55318 TRAV13-1-201ENST00000390436 360 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
FOXA3P55318 PTPN20-208ENST00000395727 790 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
FOXA3P55318 AL133260.1-201ENST00000405720 405 ntBASIC3.98□□□□□ -1.77
FOXA3P55318 CYTOR-204ENST00000409898 560 ntTSL 5 BASIC3.98□□□□□ -1.77
FOXA3P55318 AL121885.3-201ENST00000422833 115 ntTSL 3 BASIC3.98□□□□□ -1.77
FOXA3P55318 AKR1B10P1-201ENST00000425765 942 ntBASIC3.98□□□□□ -1.77
FOXA3P55318 NAP1L4P2-201ENST00000425958 899 ntBASIC3.98□□□□□ -1.77
FOXA3P55318 RPL32-206ENST00000435983 620 ntAPPRIS P1 TSL 2 BASIC3.98□□□□□ -1.77
FOXA3P55318 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC3.98□□□□□ -1.77
FOXA3P55318 GAPDHP58-201ENST00000438477 1006 ntBASIC3.98□□□□□ -1.77
FOXA3P55318 LINC02384-202ENST00000441255 567 ntTSL 4 BASIC3.98□□□□□ -1.77
FOXA3P55318 PA2G4P1-201ENST00000442248 1197 ntBASIC3.98□□□□□ -1.77
FOXA3P55318 RAET1E-AS1-201ENST00000446954 491 ntTSL 2 BASIC3.98□□□□□ -1.77
FOXA3P55318 LINC00448-202ENST00000448411 433 ntTSL 2 BASIC3.98□□□□□ -1.77
FOXA3P55318 MIR4435-2HG-214ENST00000453478 560 ntTSL 4 BASIC3.98□□□□□ -1.77
FOXA3P55318 AC020779.1-201ENST00000478757 796 ntBASIC3.98□□□□□ -1.77
FOXA3P55318 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC3.98□□□□□ -1.77
FOXA3P55318 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC3.98□□□□□ -1.77
FOXA3P55318 AC109464.1-201ENST00000511091 819 ntBASIC3.98□□□□□ -1.77
FOXA3P55318 RN7SKP46-201ENST00000515942 234 ntBASIC3.98□□□□□ -1.77
FOXA3P55318 RNA5SP96-201ENST00000516041 107 ntBASIC3.98□□□□□ -1.77
FOXA3P55318 RN7SKP35-201ENST00000517210 151 ntBASIC3.98□□□□□ -1.77
FOXA3P55318 AC037450.1-201ENST00000518129 647 ntTSL 3 BASIC3.98□□□□□ -1.77
FOXA3P55318 AC005833.3-202ENST00000544741 770 ntAPPRIS P1 TSL 3 BASIC3.98□□□□□ -1.77
FOXA3P55318 AL358913.1-201ENST00000554342 121 ntBASIC3.98□□□□□ -1.77
FOXA3P55318 AC084759.1-201ENST00000561168 290 ntBASIC3.98□□□□□ -1.77
FOXA3P55318 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC3.98□□□□□ -1.77
FOXA3P55318 AC092376.1-201ENST00000569677 335 ntTSL 2 BASIC3.98□□□□□ -1.77
FOXA3P55318 RN7SL356P-201ENST00000582228 248 ntBASIC3.98□□□□□ -1.77
FOXA3P55318 AL591222.2-201ENST00000604443 754 ntBASIC3.98□□□□□ -1.77
FOXA3P55318 LINC02362-201ENST00000608785 516 ntTSL 3 BASIC3.98□□□□□ -1.77
FOXA3P55318 LINC02362-202ENST00000610683 724 ntTSL 5 BASIC3.98□□□□□ -1.77
FOXA3P55318 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC3.98□□□□□ -1.77
FOXA3P55318 REV3L-214ENST00000619481 969 ntTSL 5 BASIC3.98□□□□□ -1.77
FOXA3P55318 AC006210.2-201ENST00000367074 1545 ntBASIC3.98□□□□□ -1.77
FOXA3P55318 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC3.98□□□□□ -1.77
FOXA3P55318 CLHC1-204ENST00000407122 2139 ntAPPRIS P1 TSL 5 BASIC3.98□□□□□ -1.77
FOXA3P55318 C11orf54-206ENST00000528099 1862 ntAPPRIS P1 TSL 2 BASIC3.98□□□□□ -1.77
FOXA3P55318 CTDSPL2-204ENST00000558966 1895 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
FOXA3P55318 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC3.98□□□□□ -1.77
FOXA3P55318 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
FOXA3P55318 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC3.98□□□□□ -1.77
FOXA3P55318 OFD1P9Y-201ENST00000417699 1491 ntBASIC3.98□□□□□ -1.77
FOXA3P55318 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
FOXA3P55318 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
FOXA3P55318 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
FOXA3P55318 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
FOXA3P55318 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
FOXA3P55318 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
FOXA3P55318 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
FOXA3P55318 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC3.97□□□□□ -1.77
FOXA3P55318 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC3.97□□□□□ -1.77
FOXA3P55318 AADAT-202ENST00000353187 2101 ntAPPRIS P3 TSL 2 BASIC3.97□□□□□ -1.77
FOXA3P55318 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC3.97□□□□□ -1.77
FOXA3P55318 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC3.97□□□□□ -1.77
FOXA3P55318 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC3.97□□□□□ -1.77
FOXA3P55318 SCGB1D4-201ENST00000358585 439 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
FOXA3P55318 RNA5SP500-201ENST00000364486 119 ntBASIC3.97□□□□□ -1.77
FOXA3P55318 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC3.97□□□□□ -1.77
FOXA3P55318 MIR551A-201ENST00000385042 96 ntBASIC3.97□□□□□ -1.77
FOXA3P55318 CCL8-201ENST00000394620 1261 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
FOXA3P55318 RPS3AP2-201ENST00000407190 754 ntBASIC3.97□□□□□ -1.77
FOXA3P55318 RN7SKP16-201ENST00000410180 299 ntBASIC3.97□□□□□ -1.77
FOXA3P55318 RN7SKP146-201ENST00000410242 334 ntBASIC3.97□□□□□ -1.77
FOXA3P55318 RN7SKP247-201ENST00000411094 308 ntBASIC3.97□□□□□ -1.77
FOXA3P55318 AK4P4-201ENST00000419465 646 ntBASIC3.97□□□□□ -1.77
FOXA3P55318 ZNF880-203ENST00000424032 558 ntTSL 4 BASIC3.97□□□□□ -1.77
FOXA3P55318 AL022331.1-201ENST00000429025 477 ntBASIC3.97□□□□□ -1.77
FOXA3P55318 MAJIN-202ENST00000432175 838 ntAPPRIS P3 TSL 1 (best) BASIC3.97□□□□□ -1.77
FOXA3P55318 BBIP1-205ENST00000436562 383 ntAPPRIS P1 TSL 3 BASIC3.97□□□□□ -1.77
FOXA3P55318 AC006335.2-201ENST00000437993 330 ntBASIC3.97□□□□□ -1.77
FOXA3P55318 AC093581.1-201ENST00000446411 461 ntTSL 2 BASIC3.97□□□□□ -1.77
FOXA3P55318 LINC01880-201ENST00000446593 561 ntTSL 4 BASIC3.97□□□□□ -1.77
FOXA3P55318 LINC01422-203ENST00000447149 509 ntTSL 4 BASIC3.97□□□□□ -1.77
FOXA3P55318 MRPL35P2-201ENST00000448009 511 ntBASIC3.97□□□□□ -1.77
FOXA3P55318 AC068491.1-201ENST00000449539 1241 ntBASIC3.97□□□□□ -1.77
FOXA3P55318 RN7SL515P-201ENST00000463999 297 ntBASIC3.97□□□□□ -1.77
FOXA3P55318 AC098847.1-201ENST00000473094 348 ntBASIC3.97□□□□□ -1.77
FOXA3P55318 ST20-201ENST00000478497 1004 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
FOXA3P55318 NPM1P29-201ENST00000483112 803 ntBASIC3.97□□□□□ -1.77
FOXA3P55318 AC008443.2-201ENST00000499096 566 ntTSL 2 BASIC3.97□□□□□ -1.77
FOXA3P55318 AC093325.1-201ENST00000508378 326 ntBASIC3.97□□□□□ -1.77
FOXA3P55318 FGB-207ENST00000509493 1164 ntTSL 5 BASIC3.97□□□□□ -1.77
FOXA3P55318 AC007569.1-202ENST00000547282 303 ntTSL 3 BASIC3.97□□□□□ -1.77
FOXA3P55318 ACYP1-204ENST00000555135 639 ntTSL 3 BASIC3.97□□□□□ -1.77
FOXA3P55318 LINC02193-202ENST00000566864 719 ntTSL 3 BASIC3.97□□□□□ -1.77
FOXA3P55318 C17orf80-208ENST00000582793 531 ntTSL 2 BASIC3.97□□□□□ -1.77
FOXA3P55318 AF117829.2-201ENST00000619538 361 ntBASIC3.97□□□□□ -1.77
FOXA3P55318 MIR6823-201ENST00000622118 61 ntBASIC3.97□□□□□ -1.77
FOXA3P55318 AC006840.1-201ENST00000623069 542 ntBASIC3.97□□□□□ -1.77
FOXA3P55318 SOX9-AS1-218ENST00000628742 733 ntTSL 5 BASIC3.97□□□□□ -1.77
FOXA3P55318 AL357140.4-201ENST00000636827 412 ntBASIC3.97□□□□□ -1.77
FOXA3P55318 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC3.97□□□□□ -1.77
FOXA3P55318 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC3.97□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 88.9 ms