Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
FOXA1P55317 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
FOXA1P55317 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
FOXA1P55317 RNA5SP335-201ENST00000363817 110 ntBASIC5.08□□□□□ -1.6
FOXA1P55317 HSPA8P15-201ENST00000401676 786 ntBASIC5.08□□□□□ -1.6
FOXA1P55317 AL355300.1-201ENST00000412439 187 ntTSL 3 BASIC5.08□□□□□ -1.6
FOXA1P55317 MARK2P12-201ENST00000420129 585 ntBASIC5.08□□□□□ -1.6
FOXA1P55317 AL390115.1-201ENST00000425271 423 ntTSL 5 BASIC5.08□□□□□ -1.6
FOXA1P55317 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC5.08□□□□□ -1.6
FOXA1P55317 AP000281.1-201ENST00000444036 316 ntBASIC5.08□□□□□ -1.6
FOXA1P55317 AC079168.1-201ENST00000458741 345 ntBASIC5.08□□□□□ -1.6
FOXA1P55317 AC094085.1-201ENST00000468914 584 ntBASIC5.08□□□□□ -1.6
FOXA1P55317 EFCAB10-203ENST00000480514 740 ntAPPRIS ALT1 TSL 1 (best) BASIC5.08□□□□□ -1.6
FOXA1P55317 LINC02040-201ENST00000481004 556 ntTSL 5 BASIC5.08□□□□□ -1.6
FOXA1P55317 FGB-207ENST00000509493 1164 ntTSL 5 BASIC5.08□□□□□ -1.6
FOXA1P55317 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC5.08□□□□□ -1.6
FOXA1P55317 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC5.08□□□□□ -1.6
FOXA1P55317 AP000619.2-201ENST00000546014 969 ntBASIC5.08□□□□□ -1.6
FOXA1P55317 AC015720.2-201ENST00000567709 334 ntBASIC5.08□□□□□ -1.6
FOXA1P55317 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC5.08□□□□□ -1.6
FOXA1P55317 AC010463.2-201ENST00000597592 661 ntTSL 5 BASIC5.08□□□□□ -1.6
FOXA1P55317 AC009597.2-201ENST00000604659 592 ntBASIC5.08□□□□□ -1.6
FOXA1P55317 TULP3P1-203ENST00000606237 586 ntTSL 4 BASIC5.08□□□□□ -1.6
FOXA1P55317 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
FOXA1P55317 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
FOXA1P55317 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
FOXA1P55317 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC5.08□□□□□ -1.6
FOXA1P55317 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
FOXA1P55317 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
FOXA1P55317 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
FOXA1P55317 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC5.08□□□□□ -1.6
FOXA1P55317 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
FOXA1P55317 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
FOXA1P55317 HAUS3-201ENST00000243706 5620 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
FOXA1P55317 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC5.07□□□□□ -1.6
FOXA1P55317 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC5.07□□□□□ -1.6
FOXA1P55317 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC5.07□□□□□ -1.6
FOXA1P55317 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
FOXA1P55317 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
FOXA1P55317 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC5.07□□□□□ -1.6
FOXA1P55317 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
FOXA1P55317 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
FOXA1P55317 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC5.07□□□□□ -1.6
FOXA1P55317 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
FOXA1P55317 RNA5SP510-201ENST00000364697 99 ntBASIC5.07□□□□□ -1.6
FOXA1P55317 RNA5SP223-201ENST00000365174 120 ntBASIC5.07□□□□□ -1.6
FOXA1P55317 LINC01317-201ENST00000366209 779 ntTSL 5 BASIC5.07□□□□□ -1.6
FOXA1P55317 AC211486.3-201ENST00000412694 621 ntBASIC5.07□□□□□ -1.6
FOXA1P55317 LINC01740-201ENST00000423842 332 ntTSL 2 BASIC5.07□□□□□ -1.6
FOXA1P55317 DSTNP5-201ENST00000427921 523 ntBASIC5.07□□□□□ -1.6
FOXA1P55317 ATP13A4-AS1-202ENST00000431512 394 ntTSL 3 BASIC5.07□□□□□ -1.6
FOXA1P55317 RPL23AP19-201ENST00000436229 369 ntBASIC5.07□□□□□ -1.6
FOXA1P55317 TAS2R39-201ENST00000446620 1017 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
FOXA1P55317 HMGN1P36-201ENST00000446623 298 ntBASIC5.07□□□□□ -1.6
FOXA1P55317 BX842559.2-201ENST00000451418 605 ntBASIC5.07□□□□□ -1.6
FOXA1P55317 AL122019.1-202ENST00000458070 546 ntTSL 5 BASIC5.07□□□□□ -1.6
FOXA1P55317 RN7SL51P-201ENST00000468230 285 ntBASIC5.07□□□□□ -1.6
FOXA1P55317 RN7SL189P-201ENST00000468631 289 ntBASIC5.07□□□□□ -1.6
FOXA1P55317 B4GALNT2P1-201ENST00000508857 307 ntBASIC5.07□□□□□ -1.6
FOXA1P55317 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC5.07□□□□□ -1.6
FOXA1P55317 AC112191.2-201ENST00000522428 333 ntBASIC5.07□□□□□ -1.6
FOXA1P55317 POLR2K-203ENST00000522439 543 ntTSL 2 BASIC5.07□□□□□ -1.6
FOXA1P55317 PFDN1-207ENST00000524074 395 ntTSL 5 BASIC5.07□□□□□ -1.6
FOXA1P55317 CA1-224ENST00000542576 1236 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
FOXA1P55317 DCTN5-207ENST00000568272 523 ntTSL 2 BASIC5.07□□□□□ -1.6
FOXA1P55317 MRO-208ENST00000588444 866 ntTSL 3 BASIC5.07□□□□□ -1.6
FOXA1P55317 VDAC1P8-204ENST00000589489 997 ntTSL 5 BASIC5.07□□□□□ -1.6
FOXA1P55317 FO393422.1-201ENST00000603908 708 ntBASIC5.07□□□□□ -1.6
FOXA1P55317 AC010245.2-201ENST00000606908 1167 ntBASIC5.07□□□□□ -1.6
FOXA1P55317 FAM72A-208ENST00000607379 1139 ntBASIC5.07□□□□□ -1.6
FOXA1P55317 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC5.07□□□□□ -1.6
FOXA1P55317 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
FOXA1P55317 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
FOXA1P55317 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC5.07□□□□□ -1.6
FOXA1P55317 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC5.07□□□□□ -1.6
FOXA1P55317 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
FOXA1P55317 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC5.07□□□□□ -1.6
FOXA1P55317 CDH18-210ENST00000511273 2318 ntTSL 5 BASIC5.07□□□□□ -1.6
FOXA1P55317 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC5.07□□□□□ -1.6
FOXA1P55317 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
FOXA1P55317 MED23-203ENST00000368058 4576 ntTSL 5 BASIC5.06□□□□□ -1.6
FOXA1P55317 AC112198.2-201ENST00000426589 6996 ntBASIC5.06□□□□□ -1.6
FOXA1P55317 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC5.06□□□□□ -1.6
FOXA1P55317 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC5.06□□□□□ -1.6
FOXA1P55317 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
FOXA1P55317 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
FOXA1P55317 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC5.06□□□□□ -1.6
FOXA1P55317 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
FOXA1P55317 AL359313.1-201ENST00000447311 2293 ntTSL 2 BASIC5.06□□□□□ -1.6
FOXA1P55317 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC5.06□□□□□ -1.6
FOXA1P55317 RNA5SP319-201ENST00000362768 119 ntBASIC5.06□□□□□ -1.6
FOXA1P55317 RN7SKP186-201ENST00000365371 303 ntBASIC5.06□□□□□ -1.6
FOXA1P55317 FIG4-202ENST00000368941 791 ntTSL 3 BASIC5.06□□□□□ -1.6
FOXA1P55317 SMARCA2-207ENST00000382186 955 ntTSL 3 BASIC5.06□□□□□ -1.6
FOXA1P55317 RNA5SP487-201ENST00000410186 122 ntBASIC5.06□□□□□ -1.6
FOXA1P55317 LINC02518-201ENST00000421737 524 ntTSL 3 BASIC5.06□□□□□ -1.6
FOXA1P55317 PQLC2L-202ENST00000426338 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
FOXA1P55317 GAPDHP58-201ENST00000438477 1006 ntBASIC5.06□□□□□ -1.6
FOXA1P55317 RPL7AP61-201ENST00000443410 636 ntBASIC5.06□□□□□ -1.6
FOXA1P55317 OARD1-207ENST00000468811 819 ntAPPRIS P1 TSL 2 BASIC5.06□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 77.4 ms