Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC6.36□□□□□ -1.39
SCN4AP35499 HERC2-201ENST00000261609 15337 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
SCN4AP35499 TTN-AS1-203ENST00000419746 4592 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
SCN4AP35499 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC6.36□□□□□ -1.39
SCN4AP35499 USP8-204ENST00000425032 3559 ntTSL 2 BASIC6.36□□□□□ -1.39
SCN4AP35499 BX284613.1-201ENST00000452221 1641 ntBASIC6.36□□□□□ -1.39
SCN4AP35499 RIMS1-219ENST00000523963 3097 ntTSL 2 BASIC6.36□□□□□ -1.39
SCN4AP35499 RNA5SP479-201ENST00000364858 117 ntBASIC6.36□□□□□ -1.39
SCN4AP35499 GJA6P-201ENST00000415117 1042 ntBASIC6.36□□□□□ -1.39
SCN4AP35499 GTF2IP2-201ENST00000424290 697 ntBASIC6.36□□□□□ -1.39
SCN4AP35499 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC6.36□□□□□ -1.39
SCN4AP35499 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC6.36□□□□□ -1.39
SCN4AP35499 SLC25A51P1-201ENST00000468432 871 ntBASIC6.36□□□□□ -1.39
SCN4AP35499 AC093720.1-201ENST00000505681 714 ntBASIC6.36□□□□□ -1.39
SCN4AP35499 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC6.36□□□□□ -1.39
SCN4AP35499 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC6.36□□□□□ -1.39
SCN4AP35499 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC6.36□□□□□ -1.39
SCN4AP35499 ANK2-201ENST00000264366 11775 ntAPPRIS ALT2 TSL 5 BASIC6.36□□□□□ -1.39
SCN4AP35499 STMN2-201ENST00000220876 2223 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
SCN4AP35499 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC6.36□□□□□ -1.39
SCN4AP35499 AC007114.2-201ENST00000576014 4281 ntBASIC6.36□□□□□ -1.39
SCN4AP35499 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC6.36□□□□□ -1.39
SCN4AP35499 MLLT10-202ENST00000377059 4850 ntAPPRIS ALT2 TSL 1 (best) BASIC6.36□□□□□ -1.39
SCN4AP35499 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
SCN4AP35499 ZNF320-205ENST00000595635 6448 ntAPPRIS P1 TSL 2 BASIC6.36□□□□□ -1.39
SCN4AP35499 TXK-201ENST00000264316 2914 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
SCN4AP35499 LMO3-235ENST00000616247 3227 ntTSL 5 BASIC6.36□□□□□ -1.39
SCN4AP35499 ABLIM1-214ENST00000533213 7606 ntTSL 5 BASIC6.36□□□□□ -1.39
SCN4AP35499 IGIP-201ENST00000333305 3458 ntAPPRIS P1 BASIC6.35□□□□□ -1.39
SCN4AP35499 SEC22A-201ENST00000309934 4228 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
SCN4AP35499 CPS1-201ENST00000233072 5821 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
SCN4AP35499 ZBTB21-205ENST00000398511 5608 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
SCN4AP35499 MCFD2-206ENST00000409800 3955 ntTSL 4 BASIC6.35□□□□□ -1.39
SCN4AP35499 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC6.35□□□□□ -1.39
SCN4AP35499 KCNQ3-205ENST00000621976 10659 ntAPPRIS ALT2 TSL 5 BASIC6.35□□□□□ -1.39
SCN4AP35499 CTBS-202ENST00000370630 6600 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
SCN4AP35499 GREM1-203ENST00000622074 14606 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
SCN4AP35499 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC6.35□□□□□ -1.39
SCN4AP35499 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC6.35□□□□□ -1.39
SCN4AP35499 ATXN10-203ENST00000402380 564 ntTSL 4 BASIC6.35□□□□□ -1.39
SCN4AP35499 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC6.35□□□□□ -1.39
SCN4AP35499 AC239367.2-201ENST00000447309 705 ntBASIC6.35□□□□□ -1.39
SCN4AP35499 RPS17P5-201ENST00000498293 408 ntBASIC6.35□□□□□ -1.39
SCN4AP35499 COX6B1P5-201ENST00000509843 249 ntBASIC6.35□□□□□ -1.39
SCN4AP35499 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC6.35□□□□□ -1.39
SCN4AP35499 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC6.35□□□□□ -1.39
SCN4AP35499 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC6.35□□□□□ -1.39
SCN4AP35499 MGAT4C-206ENST00000552435 550 ntTSL 4 BASIC6.35□□□□□ -1.39
SCN4AP35499 AL049875.1-201ENST00000554328 582 ntTSL 4 BASIC6.35□□□□□ -1.39
SCN4AP35499 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
SCN4AP35499 OR1S2-202ENST00000641683 941 ntAPPRIS P1 BASIC6.35□□□□□ -1.39
SCN4AP35499 MIPOL1-201ENST00000327441 7185 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
SCN4AP35499 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
SCN4AP35499 ADGRL3-214ENST00000511324 5042 ntTSL 5 BASIC6.35□□□□□ -1.39
SCN4AP35499 DOCK9-208ENST00000448493 7887 ntAPPRIS ALT2 TSL 5 BASIC6.35□□□□□ -1.39
SCN4AP35499 AC087258.1-203ENST00000545400 1629 ntTSL 2 BASIC6.35□□□□□ -1.39
SCN4AP35499 CFAP57-208ENST00000610710 4162 ntTSL 5 BASIC6.35□□□□□ -1.39
SCN4AP35499 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
SCN4AP35499 TTC3P1-201ENST00000399586 6081 ntBASIC6.35□□□□□ -1.39
SCN4AP35499 RIF1-201ENST00000243326 15003 ntAPPRIS P3 TSL 1 (best) BASIC6.35□□□□□ -1.39
SCN4AP35499 UGT2B11-201ENST00000446444 2088 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
SCN4AP35499 AC013268.3-201ENST00000262716 2324 ntBASIC6.34□□□□□ -1.39
SCN4AP35499 TMPRSS11BNL-202ENST00000510782 3202 ntTSL 2 BASIC6.34□□□□□ -1.39
SCN4AP35499 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
SCN4AP35499 TRDC-201ENST00000390477 720 ntAPPRIS P1 BASIC6.34□□□□□ -1.39
SCN4AP35499 RNA5SP332-201ENST00000391063 115 ntBASIC6.34□□□□□ -1.39
SCN4AP35499 RNA5SP113-201ENST00000410486 84 ntBASIC6.34□□□□□ -1.39
SCN4AP35499 AC004690.1-201ENST00000418216 328 ntBASIC6.34□□□□□ -1.39
SCN4AP35499 C9orf57-202ENST00000424431 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC6.34□□□□□ -1.39
SCN4AP35499 TXNP2-201ENST00000443918 295 ntBASIC6.34□□□□□ -1.39
SCN4AP35499 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC6.34□□□□□ -1.39
SCN4AP35499 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC6.34□□□□□ -1.39
SCN4AP35499 AC092754.1-201ENST00000472975 479 ntBASIC6.34□□□□□ -1.39
SCN4AP35499 PARP1P2-201ENST00000556806 195 ntBASIC6.34□□□□□ -1.39
SCN4AP35499 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC6.34□□□□□ -1.39
SCN4AP35499 MIR4675-201ENST00000577898 77 ntBASIC6.34□□□□□ -1.39
SCN4AP35499 MIR3667-201ENST00000581025 74 ntBASIC6.34□□□□□ -1.39
SCN4AP35499 SS18L2P2-201ENST00000583960 235 ntBASIC6.34□□□□□ -1.39
SCN4AP35499 FAT2-201ENST00000261800 14534 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
SCN4AP35499 SPRY3-201ENST00000302805 9019 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
SCN4AP35499 GBP1-201ENST00000370473 3035 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
SCN4AP35499 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
SCN4AP35499 SLC30A6-201ENST00000282587 5089 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
SCN4AP35499 NNT-201ENST00000264663 6483 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
SCN4AP35499 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
SCN4AP35499 ENTPD1-AS1-202ENST00000416301 4241 ntTSL 2 BASIC6.34□□□□□ -1.39
SCN4AP35499 ETV1-201ENST00000242066 6348 ntTSL 5 BASIC6.34□□□□□ -1.39
SCN4AP35499 FHL5-201ENST00000326771 2031 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
SCN4AP35499 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC6.34□□□□□ -1.39
SCN4AP35499 USP37-201ENST00000258399 8032 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
SCN4AP35499 BNC2-203ENST00000380672 12844 ntAPPRIS P2 TSL 2 BASIC6.34□□□□□ -1.39
SCN4AP35499 TMED2-203ENST00000509052 1975 ntTSL 2 BASIC6.34□□□□□ -1.4
SCN4AP35499 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.4
SCN4AP35499 FAM3C2-201ENST00000312214 681 ntBASIC6.34□□□□□ -1.4
SCN4AP35499 SNORD8-201ENST00000363915 110 ntBASIC6.34□□□□□ -1.4
SCN4AP35499 RNU11-201ENST00000387069 134 ntBASIC6.34□□□□□ -1.4
SCN4AP35499 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC6.34□□□□□ -1.4
SCN4AP35499 RN7SKP100-201ENST00000411258 284 ntBASIC6.34□□□□□ -1.4
SCN4AP35499 TRIM60P9Y-201ENST00000438459 816 ntBASIC6.34□□□□□ -1.4
SCN4AP35499 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC6.34□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 118.5 ms