Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 AC122688.1-201ENST00000541494 223 ntBASIC3.19□□□□□ -1.9
APOBP04114 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC3.19□□□□□ -1.9
APOBP04114 AC008782.1-201ENST00000603386 430 ntBASIC3.19□□□□□ -1.9
APOBP04114 GLRA2-204ENST00000443437 3182 ntTSL 2 BASIC3.19□□□□□ -1.9
APOBP04114 PCNX1-201ENST00000304743 12919 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
APOBP04114 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
APOBP04114 PLEKHG4B-201ENST00000283426 11515 ntAPPRIS P2 TSL 1 (best) BASIC3.18□□□□□ -1.9
APOBP04114 AC127164.1-201ENST00000548738 4196 ntTSL 2 BASIC3.18□□□□□ -1.9
APOBP04114 ADGRE1-202ENST00000312053 3128 ntAPPRIS P3 TSL 1 (best) BASIC3.18□□□□□ -1.9
APOBP04114 ERG-203ENST00000398905 4806 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
APOBP04114 LGSN-202ENST00000370658 5213 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
APOBP04114 PGM3-215ENST00000616566 5905 ntTSL 2 BASIC3.18□□□□□ -1.9
APOBP04114 ATP5A1P1-201ENST00000454088 1321 ntBASIC3.18□□□□□ -1.9
APOBP04114 ATXN1-201ENST00000244769 10602 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
APOBP04114 AC097063.1-201ENST00000426714 1797 ntBASIC3.18□□□□□ -1.9
APOBP04114 IFNG-AS1-202ENST00000538665 1791 ntTSL 2 BASIC3.18□□□□□ -1.9
APOBP04114 SPTBN1-201ENST00000333896 9075 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
APOBP04114 BTRC-204ENST00000408038 5982 ntAPPRIS ALT1 TSL 1 (best) BASIC3.18□□□□□ -1.9
APOBP04114 DNAH11-212ENST00000620169 13670 ntAPPRIS ALT2 TSL 5 BASIC3.18□□□□□ -1.9
APOBP04114 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
APOBP04114 OR7G2-201ENST00000305456 1038 ntAPPRIS P2 BASIC3.18□□□□□ -1.9
APOBP04114 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
APOBP04114 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC3.18□□□□□ -1.9
APOBP04114 Y_RNA.333-201ENST00000365274 102 ntBASIC3.18□□□□□ -1.9
APOBP04114 RNU1-64P-201ENST00000365443 163 ntBASIC3.18□□□□□ -1.9
APOBP04114 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC3.18□□□□□ -1.9
APOBP04114 FAM237A-201ENST00000441223 773 ntAPPRIS P1 TSL 2 BASIC3.18□□□□□ -1.9
APOBP04114 MRPL35P2-201ENST00000448009 511 ntBASIC3.18□□□□□ -1.9
APOBP04114 Z99916.1-201ENST00000454253 482 ntTSL 3 BASIC3.18□□□□□ -1.9
APOBP04114 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC3.18□□□□□ -1.9
APOBP04114 AC087783.1-201ENST00000527135 564 ntTSL 4 BASIC3.18□□□□□ -1.9
APOBP04114 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC3.18□□□□□ -1.9
APOBP04114 AP003400.3-201ENST00000624904 346 ntBASIC3.18□□□□□ -1.9
APOBP04114 C2CD3-202ENST00000334126 7960 ntAPPRIS ALT2 TSL 5 BASIC3.18□□□□□ -1.9
APOBP04114 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
APOBP04114 CCDC73-203ENST00000531481 4381 ntAPPRIS ALT2 TSL 2 BASIC3.18□□□□□ -1.9
APOBP04114 CTNNA2-202ENST00000361291 3071 ntTSL 5 BASIC3.18□□□□□ -1.9
APOBP04114 CSDE1-203ENST00000358528 4076 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
APOBP04114 UTY-213ENST00000612274 6586 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
APOBP04114 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
APOBP04114 DSC1-202ENST00000257198 4225 ntAPPRIS P4 TSL 2 BASIC3.18□□□□□ -1.9
APOBP04114 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC3.18□□□□□ -1.9
APOBP04114 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC3.18□□□□□ -1.9
APOBP04114 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
APOBP04114 RNA5SP428-201ENST00000365129 132 ntBASIC3.18□□□□□ -1.9
APOBP04114 AP002530.1-201ENST00000405705 684 ntBASIC3.18□□□□□ -1.9
APOBP04114 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC3.18□□□□□ -1.9
APOBP04114 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC3.18□□□□□ -1.9
APOBP04114 AC010149.1-201ENST00000455357 571 ntTSL 4 BASIC3.18□□□□□ -1.9
APOBP04114 RN7SKP276-201ENST00000516242 268 ntBASIC3.18□□□□□ -1.9
APOBP04114 LINC01966-201ENST00000595809 821 ntTSL 5 BASIC3.18□□□□□ -1.9
APOBP04114 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC3.18□□□□□ -1.9
APOBP04114 AC005392.3-201ENST00000607109 459 ntTSL 2 BASIC3.18□□□□□ -1.9
APOBP04114 AC007497.1-201ENST00000610421 561 ntBASIC3.18□□□□□ -1.9
APOBP04114 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC3.18□□□□□ -1.9
APOBP04114 THEMIS-206ENST00000630369 2786 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
APOBP04114 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC3.18□□□□□ -1.9
APOBP04114 ZNF532-223ENST00000591230 4450 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
APOBP04114 POLR3A-201ENST00000372371 6640 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
APOBP04114 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
APOBP04114 SV2C-202ENST00000502798 11035 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
APOBP04114 TLR4-202ENST00000394487 3908 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
APOBP04114 HCG18-239ENST00000454129 4433 ntTSL 4 BASIC3.18□□□□□ -1.9
APOBP04114 RNA5SP28-201ENST00000363841 119 ntBASIC3.18□□□□□ -1.9
APOBP04114 RN7SKP224-201ENST00000364140 325 ntBASIC3.18□□□□□ -1.9
APOBP04114 OR51B3P-201ENST00000412287 913 ntBASIC3.18□□□□□ -1.9
APOBP04114 AL603962.1-201ENST00000413148 436 ntTSL 5 BASIC3.18□□□□□ -1.9
APOBP04114 FABP5P2-201ENST00000439042 408 ntBASIC3.18□□□□□ -1.9
APOBP04114 HCG14-201ENST00000444986 413 ntTSL 2 BASIC3.18□□□□□ -1.9
APOBP04114 AL354714.3-201ENST00000447284 493 ntBASIC3.18□□□□□ -1.9
APOBP04114 AL451063.1-201ENST00000450164 1133 ntBASIC3.18□□□□□ -1.9
APOBP04114 AC109439.2-201ENST00000502421 564 ntTSL 4 BASIC3.18□□□□□ -1.9
APOBP04114 RNU1-45P-201ENST00000517191 141 ntBASIC3.18□□□□□ -1.9
APOBP04114 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC3.18□□□□□ -1.9
APOBP04114 Metazoa_SRP.111-201ENST00000614073 259 ntBASIC3.18□□□□□ -1.9
APOBP04114 GXYLT1P4-203ENST00000616580 641 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
APOBP04114 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC3.18□□□□□ -1.9
APOBP04114 ZBTB25-204ENST00000608382 10372 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
APOBP04114 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC3.18□□□□□ -1.9
APOBP04114 SAMMSON-226ENST00000642089 1582 ntBASIC3.18□□□□□ -1.9
APOBP04114 CASC19-260ENST00000641828 2001 ntBASIC3.18□□□□□ -1.9
APOBP04114 ANXA1-201ENST00000257497 1509 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
APOBP04114 LINC01138-208ENST00000639159 1521 ntTSL 5 BASIC3.18□□□□□ -1.9
APOBP04114 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC3.18□□□□□ -1.9
APOBP04114 AC021074.3-201ENST00000476385 1825 ntTSL 2 BASIC3.18□□□□□ -1.9
APOBP04114 ZNF229-203ENST00000613197 4835 ntAPPRIS ALT2 TSL 1 (best) BASIC3.17□□□□□ -1.9
APOBP04114 NEMP2-202ENST00000409150 6168 ntAPPRIS P1 TSL 2 BASIC3.17□□□□□ -1.9
APOBP04114 ZNF592-201ENST00000299927 7863 ntAPPRIS P1 TSL 2 BASIC3.17□□□□□ -1.9
APOBP04114 CYCSP11-201ENST00000436426 315 ntBASIC3.17□□□□□ -1.9
APOBP04114 NOP56P2-201ENST00000447491 769 ntBASIC3.17□□□□□ -1.9
APOBP04114 IBTK-210ENST00000610980 5195 ntTSL 5 BASIC3.17□□□□□ -1.9
APOBP04114 AC006133.1-201ENST00000617106 264 ntBASIC3.17□□□□□ -1.9
APOBP04114 REL-201ENST00000295025 11255 ntAPPRIS P3 TSL 1 (best) BASIC3.17□□□□□ -1.9
APOBP04114 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
APOBP04114 LRMDA-208ENST00000496424 3923 ntTSL 2 BASIC3.17□□□□□ -1.9
APOBP04114 TRPC4-207ENST00000426868 2709 ntTSL 2 BASIC3.17□□□□□ -1.9
APOBP04114 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
APOBP04114 GNS-202ENST00000418919 4877 ntAPPRIS ALT2 TSL 1 (best) BASIC3.17□□□□□ -1.9
APOBP04114 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC3.17□□□□□ -1.9
APOBP04114 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 96.3 ms