Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AL513314.2-202ENST00000617077 536 ntTSL 5 BASIC5.77□□□□□ -1.49
CCDC42Q96M95 AL513314.2-201ENST00000621440 545 ntTSL 5 BASIC5.77□□□□□ -1.49
CCDC42Q96M95 AC005972.4-201ENST00000636248 1131 ntTSL 5 BASIC5.77□□□□□ -1.49
CCDC42Q96M95 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
CCDC42Q96M95 AC092375.1-202ENST00000639452 404 ntTSL 3 BASIC5.77□□□□□ -1.49
CCDC42Q96M95 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
CCDC42Q96M95 SMG1P7-201ENST00000565246 2704 ntBASIC5.77□□□□□ -1.49
CCDC42Q96M95 AFP-201ENST00000226359 1914 ntTSL 5 BASIC5.77□□□□□ -1.49
CCDC42Q96M95 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC42Q96M95 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
CCDC42Q96M95 PSG7-206ENST00000623675 1392 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC42Q96M95 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC42Q96M95 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC42Q96M95 YES1P1-201ENST00000418510 1628 ntBASIC5.77□□□□□ -1.49
CCDC42Q96M95 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC42Q96M95 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC42Q96M95 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC5.76□□□□□ -1.49
CCDC42Q96M95 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC5.76□□□□□ -1.49
CCDC42Q96M95 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC5.76□□□□□ -1.49
CCDC42Q96M95 MATR3-203ENST00000502499 2664 ntTSL 5 BASIC5.76□□□□□ -1.49
CCDC42Q96M95 AC003985.2-201ENST00000562268 1669 ntBASIC5.76□□□□□ -1.49
CCDC42Q96M95 AC106872.5-201ENST00000508856 1416 ntBASIC5.76□□□□□ -1.49
CCDC42Q96M95 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC42Q96M95 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC5.76□□□□□ -1.49
CCDC42Q96M95 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC5.76□□□□□ -1.49
CCDC42Q96M95 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC42Q96M95 RNU4-2-201ENST00000365668 141 ntBASIC5.76□□□□□ -1.49
CCDC42Q96M95 EI24P3-201ENST00000399046 1062 ntBASIC5.76□□□□□ -1.49
CCDC42Q96M95 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC5.76□□□□□ -1.49
CCDC42Q96M95 AC013472.2-201ENST00000416226 306 ntTSL 3 BASIC5.76□□□□□ -1.49
CCDC42Q96M95 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC5.76□□□□□ -1.49
CCDC42Q96M95 AC006482.1-201ENST00000448898 273 ntTSL 3 BASIC5.76□□□□□ -1.49
CCDC42Q96M95 AL672138.1-201ENST00000450604 1015 ntBASIC5.76□□□□□ -1.49
CCDC42Q96M95 LINC01448-201ENST00000455947 1171 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC42Q96M95 LDHBP2-201ENST00000456969 1005 ntBASIC5.76□□□□□ -1.49
CCDC42Q96M95 SCARNA16.4-201ENST00000516956 187 ntBASIC5.76□□□□□ -1.49
CCDC42Q96M95 TBCA-207ENST00000520039 157 ntTSL 3 BASIC5.76□□□□□ -1.49
CCDC42Q96M95 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC5.76□□□□□ -1.49
CCDC42Q96M95 AP000763.3-201ENST00000542598 334 ntTSL 5 BASIC5.76□□□□□ -1.49
CCDC42Q96M95 LINC00687-203ENST00000558175 696 ntTSL 3 BASIC5.76□□□□□ -1.49
CCDC42Q96M95 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC5.76□□□□□ -1.49
CCDC42Q96M95 OR14A16-202ENST00000641093 1367 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
CCDC42Q96M95 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC42Q96M95 PIGA-206ENST00000542278 3626 ntAPPRIS P1 TSL 5 BASIC5.76□□□□□ -1.49
CCDC42Q96M95 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC5.76□□□□□ -1.49
CCDC42Q96M95 SLC41A2-201ENST00000258538 4449 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC42Q96M95 SYTL2-204ENST00000389958 1943 ntTSL 2 BASIC5.76□□□□□ -1.49
CCDC42Q96M95 ANKS1B-216ENST00000549558 2268 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC42Q96M95 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC5.76□□□□□ -1.49
CCDC42Q96M95 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC5.75□□□□□ -1.49
CCDC42Q96M95 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC42Q96M95 AC004817.4-201ENST00000602396 3625 ntBASIC5.75□□□□□ -1.49
CCDC42Q96M95 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC42Q96M95 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC5.75□□□□□ -1.49
CCDC42Q96M95 AL449283.1-201ENST00000602631 3403 ntBASIC5.75□□□□□ -1.49
CCDC42Q96M95 AC012078.1-201ENST00000405035 1646 ntBASIC5.75□□□□□ -1.49
CCDC42Q96M95 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC42Q96M95 AC021205.3-201ENST00000609680 1709 ntTSL 3 BASIC5.75□□□□□ -1.49
CCDC42Q96M95 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC42Q96M95 AL662874.1-201ENST00000426065 230 ntBASIC5.75□□□□□ -1.49
CCDC42Q96M95 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC5.75□□□□□ -1.49
CCDC42Q96M95 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC5.75□□□□□ -1.49
CCDC42Q96M95 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC5.75□□□□□ -1.49
CCDC42Q96M95 SLC9A9-AS2-201ENST00000490153 327 ntTSL 5 BASIC5.75□□□□□ -1.49
CCDC42Q96M95 AL117692.1-201ENST00000494283 713 ntBASIC5.75□□□□□ -1.49
CCDC42Q96M95 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC5.75□□□□□ -1.49
CCDC42Q96M95 RNA5SP271-201ENST00000516700 88 ntBASIC5.75□□□□□ -1.49
CCDC42Q96M95 PKIA-AS1-201ENST00000519242 995 ntTSL 5 BASIC5.75□□□□□ -1.49
CCDC42Q96M95 TRIM77BP-201ENST00000524985 1119 ntBASIC5.75□□□□□ -1.49
CCDC42Q96M95 RERGL-202ENST00000536890 367 ntTSL 3 BASIC5.75□□□□□ -1.49
CCDC42Q96M95 MALAT1-203ENST00000544868 480 ntTSL 3 BASIC5.75□□□□□ -1.49
CCDC42Q96M95 AC006349.1-201ENST00000555526 235 ntBASIC5.75□□□□□ -1.49
CCDC42Q96M95 RBM22P12-201ENST00000567098 1255 ntBASIC5.75□□□□□ -1.49
CCDC42Q96M95 AC022884.2-201ENST00000578535 580 ntBASIC5.75□□□□□ -1.49
CCDC42Q96M95 ZNF667-AS1-207ENST00000592146 668 ntTSL 5 BASIC5.75□□□□□ -1.49
CCDC42Q96M95 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC5.75□□□□□ -1.49
CCDC42Q96M95 Z98949.1-220ENST00000609809 804 ntTSL 5 BASIC5.75□□□□□ -1.49
CCDC42Q96M95 AL118522.2-201ENST00000616045 615 ntBASIC5.75□□□□□ -1.49
CCDC42Q96M95 Six3os1_2.1-201ENST00000616963 217 ntBASIC5.75□□□□□ -1.49
CCDC42Q96M95 MALAT1-217ENST00000620902 352 ntTSL 3 BASIC5.75□□□□□ -1.49
CCDC42Q96M95 ADAM2-207ENST00000622267 2480 ntAPPRIS ALT2 TSL 2 BASIC5.75□□□□□ -1.49
CCDC42Q96M95 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC5.75□□□□□ -1.49
CCDC42Q96M95 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC42Q96M95 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC5.75□□□□□ -1.49
CCDC42Q96M95 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC42Q96M95 TBC1D15-201ENST00000319106 2159 ntTSL 2 BASIC5.74□□□□□ -1.49
CCDC42Q96M95 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
CCDC42Q96M95 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC42Q96M95 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC42Q96M95 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC5.74□□□□□ -1.49
CCDC42Q96M95 AC114947.2-201ENST00000565748 2125 ntBASIC5.74□□□□□ -1.49
CCDC42Q96M95 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC42Q96M95 DEFB118-201ENST00000253381 1158 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC42Q96M95 HNMT-203ENST00000329366 835 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC42Q96M95 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC5.74□□□□□ -1.49
CCDC42Q96M95 RN7SKP28-201ENST00000364770 305 ntBASIC5.74□□□□□ -1.49
CCDC42Q96M95 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC5.74□□□□□ -1.49
CCDC42Q96M95 CLNS1AP1-201ENST00000435954 682 ntBASIC5.74□□□□□ -1.49
CCDC42Q96M95 AC006019.3-201ENST00000446335 698 ntTSL 3 BASIC5.74□□□□□ -1.49
CCDC42Q96M95 HLA-DPA3-207ENST00000454398 229 ntBASIC5.74□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 125.7 ms