Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 NLRP8-202ENST00000590542 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC7.08□□□□□ -1.28
MSX1P28360 MARK2P10-201ENST00000454959 1437 ntBASIC7.08□□□□□ -1.28
MSX1P28360 AP003066.1-201ENST00000527528 1647 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
MSX1P28360 DYNC1I2P1-201ENST00000435916 1838 ntBASIC7.08□□□□□ -1.28
MSX1P28360 MS4A6A-208ENST00000528851 1806 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
MSX1P28360 ZNF107-206ENST00000620827 5685 ntAPPRIS P4 TSL 4 BASIC7.08□□□□□ -1.28
MSX1P28360 RTL3-201ENST00000321110 2648 ntAPPRIS P1 TSL 2 BASIC7.08□□□□□ -1.28
MSX1P28360 MMP25-AS1-206ENST00000573130 4434 ntTSL 2 BASIC7.08□□□□□ -1.28
MSX1P28360 ANO6-201ENST00000320560 5975 ntAPPRIS P3 TSL 1 (best) BASIC7.08□□□□□ -1.28
MSX1P28360 FHL1-204ENST00000370683 2565 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
MSX1P28360 IL31RA-206ENST00000447346 2577 ntAPPRIS P3 TSL 1 (best) BASIC7.08□□□□□ -1.28
MSX1P28360 PSG5-202ENST00000366175 1766 ntTSL 5 BASIC7.08□□□□□ -1.28
MSX1P28360 CTAGE1-201ENST00000391403 4313 ntAPPRIS P2 BASIC7.08□□□□□ -1.28
MSX1P28360 ZNF37BP-203ENST00000452306 1352 ntBASIC7.08□□□□□ -1.28
MSX1P28360 ABLIM1-214ENST00000533213 7606 ntTSL 5 BASIC7.07□□□□□ -1.28
MSX1P28360 AL359551.1-201ENST00000442726 2900 ntTSL 2 BASIC7.07□□□□□ -1.28
MSX1P28360 AC009948.5-201ENST00000624360 4406 ntBASIC7.07□□□□□ -1.28
MSX1P28360 CEP57L1-214ENST00000521277 3832 ntTSL 2 BASIC7.07□□□□□ -1.28
MSX1P28360 PTPRG-AS1-204ENST00000474795 2661 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
MSX1P28360 ZNF763-202ENST00000358987 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC7.07□□□□□ -1.28
MSX1P28360 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC7.07□□□□□ -1.28
MSX1P28360 UEVLD-205ENST00000396197 4156 ntAPPRIS P1 TSL 5 BASIC7.07□□□□□ -1.28
MSX1P28360 ZC3H11A-203ENST00000367212 3004 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
MSX1P28360 TMEM269-204ENST00000637012 3354 ntAPPRIS ALT2 TSL 5 BASIC7.07□□□□□ -1.28
MSX1P28360 LINC01741-201ENST00000427173 1666 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
MSX1P28360 CCDC63-204ENST00000552694 1651 ntAPPRIS ALT2 TSL 1 (best) BASIC7.07□□□□□ -1.28
MSX1P28360 KIF15-201ENST00000326047 4842 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
MSX1P28360 AL121835.2-201ENST00000624253 3502 ntBASIC7.07□□□□□ -1.28
MSX1P28360 NSUN6-201ENST00000377304 2201 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
MSX1P28360 SLC10A7-201ENST00000335472 2798 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
MSX1P28360 AL512624.2-201ENST00000621705 2566 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
MSX1P28360 OPALIN-206ENST00000611913 3115 ntTSL 5 BASIC7.07□□□□□ -1.28
MSX1P28360 MLIP-201ENST00000274897 1815 ntAPPRIS P3 TSL 2 BASIC7.07□□□□□ -1.28
MSX1P28360 MORF4L2-208ENST00000441076 1828 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
MSX1P28360 OR56A4-201ENST00000330728 1209 ntBASIC7.07□□□□□ -1.28
MSX1P28360 SNORA63C-201ENST00000364578 129 ntBASIC7.07□□□□□ -1.28
MSX1P28360 AC074375.1-201ENST00000372993 192 ntBASIC7.07□□□□□ -1.28
MSX1P28360 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC7.07□□□□□ -1.28
MSX1P28360 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC7.07□□□□□ -1.28
MSX1P28360 AC104297.1-201ENST00000393779 870 ntBASIC7.07□□□□□ -1.28
MSX1P28360 RPL23A-203ENST00000394938 688 ntTSL 2 BASIC7.07□□□□□ -1.28
MSX1P28360 AL353151.1-201ENST00000402406 604 ntBASIC7.07□□□□□ -1.28
MSX1P28360 RN7SKP207-201ENST00000411204 303 ntBASIC7.07□□□□□ -1.28
MSX1P28360 RPL26P29-201ENST00000415623 438 ntBASIC7.07□□□□□ -1.28
MSX1P28360 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC7.07□□□□□ -1.28
MSX1P28360 GAPDHP51-201ENST00000426454 1000 ntBASIC7.07□□□□□ -1.28
MSX1P28360 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC7.07□□□□□ -1.28
MSX1P28360 AL121776.1-201ENST00000429337 372 ntBASIC7.07□□□□□ -1.28
MSX1P28360 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC7.07□□□□□ -1.28
MSX1P28360 PPIAP17-201ENST00000438507 471 ntBASIC7.07□□□□□ -1.28
MSX1P28360 AC231532.1-201ENST00000438584 312 ntBASIC7.07□□□□□ -1.28
MSX1P28360 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC7.07□□□□□ -1.28
MSX1P28360 HIST1H2APS6-201ENST00000448609 364 ntBASIC7.07□□□□□ -1.28
MSX1P28360 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC7.07□□□□□ -1.28
MSX1P28360 AC104306.1-201ENST00000449702 371 ntBASIC7.07□□□□□ -1.28
MSX1P28360 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC7.07□□□□□ -1.28
MSX1P28360 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC7.07□□□□□ -1.28
MSX1P28360 AL157400.2-201ENST00000454174 563 ntTSL 2 BASIC7.07□□□□□ -1.28
MSX1P28360 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC7.07□□□□□ -1.28
MSX1P28360 LINC01006-207ENST00000458645 738 ntTSL 4 BASIC7.07□□□□□ -1.28
MSX1P28360 RN7SL19P-201ENST00000462522 306 ntBASIC7.07□□□□□ -1.28
MSX1P28360 AC091564.1-201ENST00000464563 479 ntBASIC7.07□□□□□ -1.28
MSX1P28360 AC112206.1-201ENST00000468416 477 ntBASIC7.07□□□□□ -1.28
MSX1P28360 SERF1B-203ENST00000503931 569 ntTSL 4 BASIC7.07□□□□□ -1.28
MSX1P28360 CDH12P2-201ENST00000504393 298 ntBASIC7.07□□□□□ -1.28
MSX1P28360 SERF1A-204ENST00000504458 569 ntTSL 4 BASIC7.07□□□□□ -1.28
MSX1P28360 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC7.07□□□□□ -1.28
MSX1P28360 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC7.07□□□□□ -1.28
MSX1P28360 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC7.07□□□□□ -1.28
MSX1P28360 MTND6P2-201ENST00000512226 524 ntBASIC7.07□□□□□ -1.28
MSX1P28360 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC7.07□□□□□ -1.28
MSX1P28360 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC7.07□□□□□ -1.28
MSX1P28360 AC105029.1-201ENST00000520250 669 ntBASIC7.07□□□□□ -1.28
MSX1P28360 RAB30-205ENST00000527633 792 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
MSX1P28360 HNRNPCP8-201ENST00000528764 888 ntBASIC7.07□□□□□ -1.28
MSX1P28360 REG4-204ENST00000530654 612 ntTSL 5 BASIC7.07□□□□□ -1.28
MSX1P28360 AP003034.1-201ENST00000534621 422 ntBASIC7.07□□□□□ -1.28
MSX1P28360 DDIT3-204ENST00000551116 1067 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
MSX1P28360 AC011611.1-201ENST00000552179 197 ntBASIC7.07□□□□□ -1.28
MSX1P28360 AC023905.1-201ENST00000559799 1178 ntTSL 2 BASIC7.07□□□□□ -1.28
MSX1P28360 AC020661.2-201ENST00000560114 134 ntBASIC7.07□□□□□ -1.28
MSX1P28360 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC7.07□□□□□ -1.28
MSX1P28360 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC7.07□□□□□ -1.28
MSX1P28360 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC7.07□□□□□ -1.28
MSX1P28360 AC027796.5-201ENST00000573568 560 ntTSL 5 BASIC7.07□□□□□ -1.28
MSX1P28360 RN7SL697P-201ENST00000582484 299 ntBASIC7.07□□□□□ -1.28
MSX1P28360 ZNF431-203ENST00000594425 610 ntTSL 2 BASIC7.07□□□□□ -1.28
MSX1P28360 ZNF431-206ENST00000599296 586 ntTSL 5 BASIC7.07□□□□□ -1.28
MSX1P28360 BPIFA4P-204ENST00000605211 656 ntTSL 2 BASIC7.07□□□□□ -1.28
MSX1P28360 AC018695.5-201ENST00000605872 315 ntBASIC7.07□□□□□ -1.28
MSX1P28360 AL355802.3-201ENST00000607571 545 ntBASIC7.07□□□□□ -1.28
MSX1P28360 MALAT1-212ENST00000618132 725 ntTSL 2 BASIC7.07□□□□□ -1.28
MSX1P28360 AL109954.1-201ENST00000619495 557 ntTSL 4 BASIC7.07□□□□□ -1.28
MSX1P28360 OFCC1-218ENST00000622909 754 ntAPPRIS ALT2 TSL 5 BASIC7.07□□□□□ -1.28
MSX1P28360 OR4X2-201ENST00000624868 1025 ntAPPRIS P1 BASIC7.07□□□□□ -1.28
MSX1P28360 OR56A4-203ENST00000641279 1209 ntAPPRIS P1 BASIC7.07□□□□□ -1.28
MSX1P28360 ROBO1-202ENST00000464233 6742 ntAPPRIS ALT2 TSL 5 BASIC7.07□□□□□ -1.28
MSX1P28360 SYTL2-208ENST00000524452 2733 ntAPPRIS P3 TSL 2 BASIC7.07□□□□□ -1.28
MSX1P28360 TMEM246-203ENST00000374851 5070 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
MSX1P28360 WBP1L-201ENST00000369889 4107 ntAPPRIS P3 TSL 1 (best) BASIC7.07□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 81 ms