Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 TRIM22-201ENST00000379965 2989 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC3Q9BQI4 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC5.54□□□□□ -1.52
CCDC3Q9BQI4 ECT2L-203ENST00000423192 4319 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
CCDC3Q9BQI4 CASC19-255ENST00000641733 1385 ntBASIC5.54□□□□□ -1.52
CCDC3Q9BQI4 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 CDY11P-201ENST00000447168 1651 ntBASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 AC021074.3-201ENST00000476385 1825 ntTSL 2 BASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 AL442128.2-201ENST00000620246 1824 ntBASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 EEF1A1P30-201ENST00000429708 1315 ntBASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 LGALS8-222ENST00000527974 1349 ntAPPRIS P4 TSL 5 BASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 AP002478.1-201ENST00000577848 1455 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 AC005224.3-201ENST00000584683 2140 ntBASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 PUS3-203ENST00000530811 1792 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 ZNF311-203ENST00000377179 2730 ntAPPRIS P1 TSL 5 BASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 BIRC3-207ENST00000615299 4342 ntAPPRIS P1 TSL 5 BASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 DLG1-210ENST00000422288 2854 ntTSL 5 BASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 MYO3A-202ENST00000376301 727 ntTSL 5 BASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 BPHL-201ENST00000380368 797 ntTSL 5 BASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 SPTLC1P2-201ENST00000407089 121 ntBASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 LINC00626-201ENST00000420691 955 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 AL132796.1-201ENST00000421617 479 ntTSL 3 BASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 LINC00458-201ENST00000423442 1060 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 LINC02529-201ENST00000429657 772 ntTSL 3 BASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 AC096775.1-201ENST00000437724 448 ntBASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 RANP1-206ENST00000455094 651 ntBASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 RN7SL610P-201ENST00000463845 291 ntBASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 AC007688.1-201ENST00000475592 759 ntBASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 OR5M14P-201ENST00000506803 618 ntBASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 AC105384.2-201ENST00000508433 640 ntBASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 AC074255.1-201ENST00000511259 501 ntBASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 AC137590.1-201ENST00000542422 495 ntTSL 3 BASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 OR9A4-201ENST00000548136 1093 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 LINC02412-201ENST00000552584 1269 ntTSL 5 BASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 AC044860.2-201ENST00000561005 179 ntBASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 AC079414.1-201ENST00000563114 488 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 MRPS21P7-201ENST00000566937 238 ntBASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 SUGT1P3-202ENST00000604259 383 ntBASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 AC010245.2-201ENST00000606908 1167 ntBASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 AC090607.5-201ENST00000615692 224 ntBASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 AL391597.1-201ENST00000618707 694 ntBASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 AC008115.4-201ENST00000619780 775 ntBASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 MIR6837-201ENST00000620884 64 ntBASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 AP000550.3-201ENST00000637734 379 ntBASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 GTDC1-201ENST00000241391 2356 ntTSL 2 BASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 CYP4Z2P-201ENST00000423332 1512 ntBASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 ZPLD1-201ENST00000306176 3619 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC3Q9BQI4 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 NXF3-201ENST00000395065 1938 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 ATP5A1P4-201ENST00000556888 1605 ntBASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 RALYL-206ENST00000521376 1457 ntTSL 5 BASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 AC109780.1-201ENST00000451768 1344 ntBASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 CLVS1-203ENST00000518592 2880 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 AC007159.1-201ENST00000566529 4706 ntBASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 Y_RNA.62-201ENST00000362840 99 ntBASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 SNORA58B-201ENST00000364259 136 ntBASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 OR2B3-201ENST00000377173 1106 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 OR6C65-201ENST00000379665 1076 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 AC009804.1-201ENST00000400949 179 ntBASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 GAPDHP42-201ENST00000406848 981 ntBASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 NACAP7-201ENST00000407371 609 ntBASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 NT5C3A-206ENST00000409787 840 ntTSL 2 BASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 DPPA2P3-201ENST00000411853 655 ntBASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 NIFKP3-201ENST00000417799 865 ntBASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 AL122019.1-201ENST00000438575 798 ntTSL 3 BASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 AC009487.1-201ENST00000444164 403 ntTSL 3 BASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 RAD1P2-201ENST00000446414 663 ntBASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 OR7E116P-201ENST00000448529 957 ntBASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 CD200R1L-202ENST00000448932 750 ntAPPRIS ALT2 TSL 5 BASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 AP000547.1-201ENST00000454360 617 ntBASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 RPS23P2-201ENST00000463671 415 ntBASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 RN7SL583P-201ENST00000475692 287 ntBASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 AC135999.1-201ENST00000478962 479 ntBASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 LINC02040-201ENST00000481004 556 ntTSL 5 BASIC5.52□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 157.3 ms