Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 OR5B12-201ENST00000302572 1054 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
MSH3P20585 TMSB4XP4-201ENST00000323496 618 ntBASIC5.61□□□□□ -1.51
MSH3P20585 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC5.61□□□□□ -1.51
MSH3P20585 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
MSH3P20585 CLEC4A-204ENST00000360500 597 ntTSL 5 BASIC5.61□□□□□ -1.51
MSH3P20585 LEMD1-203ENST00000367152 741 ntTSL 2 BASIC5.61□□□□□ -1.51
MSH3P20585 SSX5-203ENST00000376923 1208 ntAPPRIS ALT2 TSL 5 BASIC5.61□□□□□ -1.51
MSH3P20585 AL031985.1-201ENST00000392713 418 ntBASIC5.61□□□□□ -1.51
MSH3P20585 AL355339.1-202ENST00000417542 458 ntTSL 2 BASIC5.61□□□□□ -1.51
MSH3P20585 KCNMA1-AS3-201ENST00000418515 701 ntTSL 3 BASIC5.61□□□□□ -1.51
MSH3P20585 AC093155.2-201ENST00000420734 937 ntBASIC5.61□□□□□ -1.51
MSH3P20585 AL354766.1-201ENST00000423396 542 ntBASIC5.61□□□□□ -1.51
MSH3P20585 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC5.61□□□□□ -1.51
MSH3P20585 TMEM183AP1-205ENST00000432739 290 ntBASIC5.61□□□□□ -1.51
MSH3P20585 AL355339.1-201ENST00000434386 435 ntTSL 2 BASIC5.61□□□□□ -1.51
MSH3P20585 AC099670.2-201ENST00000435130 321 ntBASIC5.61□□□□□ -1.51
MSH3P20585 XKRYP6-201ENST00000440468 1116 ntBASIC5.61□□□□□ -1.51
MSH3P20585 XKRYP3-201ENST00000442113 1116 ntBASIC5.61□□□□□ -1.51
MSH3P20585 AC064862.4-201ENST00000442180 334 ntBASIC5.61□□□□□ -1.51
MSH3P20585 CYCSP51-201ENST00000443545 318 ntBASIC5.61□□□□□ -1.51
MSH3P20585 AC005297.1-201ENST00000444765 862 ntBASIC5.61□□□□□ -1.51
MSH3P20585 MTND3P4-201ENST00000453537 303 ntBASIC5.61□□□□□ -1.51
MSH3P20585 MRE11P1-201ENST00000464884 2127 ntBASIC5.61□□□□□ -1.51
MSH3P20585 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC5.61□□□□□ -1.51
MSH3P20585 AC021146.10-201ENST00000515628 706 ntBASIC5.61□□□□□ -1.51
MSH3P20585 RNU6-1334P-201ENST00000516032 105 ntBASIC5.61□□□□□ -1.51
MSH3P20585 AC124242.1-205ENST00000517798 646 ntTSL 5 BASIC5.61□□□□□ -1.51
MSH3P20585 AP003037.1-201ENST00000537594 267 ntTSL 5 BASIC5.61□□□□□ -1.51
MSH3P20585 AC079907.2-202ENST00000547004 423 ntTSL 2 BASIC5.61□□□□□ -1.51
MSH3P20585 AC139697.1-201ENST00000548429 745 ntBASIC5.61□□□□□ -1.51
MSH3P20585 AL390816.1-201ENST00000553990 322 ntTSL 3 BASIC5.61□□□□□ -1.51
MSH3P20585 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC5.61□□□□□ -1.51
MSH3P20585 DPPA2P4-201ENST00000563717 878 ntBASIC5.61□□□□□ -1.51
MSH3P20585 MIR4310-201ENST00000582950 57 ntBASIC5.61□□□□□ -1.51
MSH3P20585 AP001381.1-201ENST00000584109 534 ntTSL 5 BASIC5.61□□□□□ -1.51
MSH3P20585 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
MSH3P20585 AL391425.1-202ENST00000617518 774 ntTSL 5 BASIC5.61□□□□□ -1.51
MSH3P20585 AC127024.6-201ENST00000621598 424 ntBASIC5.61□□□□□ -1.51
MSH3P20585 LINC01125-249ENST00000627399 1067 ntAPPRIS P5 TSL 5 BASIC5.61□□□□□ -1.51
MSH3P20585 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
MSH3P20585 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
MSH3P20585 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
MSH3P20585 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
MSH3P20585 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC5.6□□□□□ -1.51
MSH3P20585 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC5.6□□□□□ -1.51
MSH3P20585 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC5.6□□□□□ -1.51
MSH3P20585 NUF2-202ENST00000367900 1842 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
MSH3P20585 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC5.6□□□□□ -1.51
MSH3P20585 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
MSH3P20585 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
MSH3P20585 PI15-202ENST00000523773 1413 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
MSH3P20585 DEFB118-201ENST00000253381 1158 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
MSH3P20585 RNA5SP30-201ENST00000365552 115 ntBASIC5.6□□□□□ -1.51
MSH3P20585 SDHDP6-201ENST00000414693 480 ntBASIC5.6□□□□□ -1.51
MSH3P20585 NENFP1-201ENST00000419476 466 ntBASIC5.6□□□□□ -1.51
MSH3P20585 AC113412.1-201ENST00000425840 504 ntBASIC5.6□□□□□ -1.51
MSH3P20585 AL662874.1-201ENST00000426065 230 ntBASIC5.6□□□□□ -1.51
MSH3P20585 AC003991.1-210ENST00000434733 1048 ntTSL 3 BASIC5.6□□□□□ -1.51
MSH3P20585 Z84478.1-201ENST00000438230 1219 ntBASIC5.6□□□□□ -1.51
MSH3P20585 LINC01880-201ENST00000446593 561 ntTSL 4 BASIC5.6□□□□□ -1.51
MSH3P20585 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC5.6□□□□□ -1.51
MSH3P20585 SNORD125-201ENST00000459538 96 ntBASIC5.6□□□□□ -1.51
MSH3P20585 RNU7-157P-201ENST00000459600 66 ntBASIC5.6□□□□□ -1.51
MSH3P20585 CRNDE-201ENST00000501177 614 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
MSH3P20585 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC5.6□□□□□ -1.51
MSH3P20585 GAPDHP62-201ENST00000515313 990 ntBASIC5.6□□□□□ -1.51
MSH3P20585 HNRNPRP2-201ENST00000528421 743 ntBASIC5.6□□□□□ -1.51
MSH3P20585 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC5.6□□□□□ -1.51
MSH3P20585 PSMA4-209ENST00000559082 1094 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
MSH3P20585 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC5.6□□□□□ -1.51
MSH3P20585 AC005692.2-201ENST00000566521 596 ntTSL 3 BASIC5.6□□□□□ -1.51
MSH3P20585 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC5.6□□□□□ -1.51
MSH3P20585 ZNF971P-202ENST00000568619 461 ntTSL 3 BASIC5.6□□□□□ -1.51
MSH3P20585 AC011468.1-201ENST00000569091 675 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
MSH3P20585 CASC22-201ENST00000569713 386 ntTSL 5 BASIC5.6□□□□□ -1.51
MSH3P20585 AC010547.6-201ENST00000571789 193 ntBASIC5.6□□□□□ -1.51
MSH3P20585 AC010401.3-201ENST00000576600 582 ntTSL 4 BASIC5.6□□□□□ -1.51
MSH3P20585 AC011451.1-201ENST00000591336 405 ntTSL 3 BASIC5.6□□□□□ -1.51
MSH3P20585 LINC01198-207ENST00000598084 881 ntTSL 5 BASIC5.6□□□□□ -1.51
MSH3P20585 ASNSD1-208ENST00000607690 535 ntTSL 2 BASIC5.6□□□□□ -1.51
MSH3P20585 AL136370.1-201ENST00000608166 691 ntBASIC5.6□□□□□ -1.51
MSH3P20585 AL133445.2-201ENST00000611191 527 ntBASIC5.6□□□□□ -1.51
MSH3P20585 PACRG-210ENST00000611387 279 ntTSL 5 BASIC5.6□□□□□ -1.51
MSH3P20585 AC003001.2-201ENST00000616294 831 ntBASIC5.6□□□□□ -1.51
MSH3P20585 AC073592.7-201ENST00000623659 507 ntBASIC5.6□□□□□ -1.51
MSH3P20585 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC5.6□□□□□ -1.51
MSH3P20585 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC5.6□□□□□ -1.51
MSH3P20585 PWAR1-201ENST00000624188 2414 ntBASIC5.6□□□□□ -1.51
MSH3P20585 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC5.6□□□□□ -1.51
MSH3P20585 ANKRD49-208ENST00000544253 3002 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
MSH3P20585 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
MSH3P20585 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC5.6□□□□□ -1.51
MSH3P20585 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC5.6□□□□□ -1.51
MSH3P20585 ATXN7-208ENST00000484332 2741 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
MSH3P20585 SRRM1P3-201ENST00000426911 2678 ntBASIC5.6□□□□□ -1.51
MSH3P20585 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC5.59□□□□□ -1.51
MSH3P20585 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
MSH3P20585 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC5.59□□□□□ -1.51
MSH3P20585 RNF19BPY-201ENST00000458209 1550 ntBASIC5.59□□□□□ -1.51
MSH3P20585 AC018809.2-201ENST00000602436 3823 ntBASIC5.59□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 72.3 ms