Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SIX4Q9UIU6 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SIX4Q9UIU6 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
SIX4Q9UIU6 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
SIX4Q9UIU6 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SIX4Q9UIU6 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
SIX4Q9UIU6 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC21.05■□□□□ 0.96
SIX4Q9UIU6 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SIX4Q9UIU6 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC21.05■□□□□ 0.96
SIX4Q9UIU6 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
SIX4Q9UIU6 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SIX4Q9UIU6 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SIX4Q9UIU6 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
SIX4Q9UIU6 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SIX4Q9UIU6 RPS2P4-201ENST00000476944 856 ntBASIC21.05■□□□□ 0.96
SIX4Q9UIU6 FDX2-207ENST00000494368 584 ntTSL 4 BASIC21.05■□□□□ 0.96
SIX4Q9UIU6 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC21.05■□□□□ 0.96
SIX4Q9UIU6 AF186192.3-201ENST00000583427 947 ntBASIC21.05■□□□□ 0.96
SIX4Q9UIU6 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SIX4Q9UIU6 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC21.05■□□□□ 0.96
SIX4Q9UIU6 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
SIX4Q9UIU6 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SIX4Q9UIU6 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
SIX4Q9UIU6 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SIX4Q9UIU6 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC21.04■□□□□ 0.96
SIX4Q9UIU6 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SIX4Q9UIU6 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SIX4Q9UIU6 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SIX4Q9UIU6 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SIX4Q9UIU6 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SIX4Q9UIU6 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
SIX4Q9UIU6 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SIX4Q9UIU6 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SIX4Q9UIU6 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SIX4Q9UIU6 MDFI-202ENST00000373050 809 ntTSL 2 BASIC21.04■□□□□ 0.96
SIX4Q9UIU6 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC21.04■□□□□ 0.96
SIX4Q9UIU6 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC21.04■□□□□ 0.96
SIX4Q9UIU6 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
SIX4Q9UIU6 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC21.04■□□□□ 0.96
SIX4Q9UIU6 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC21.04■□□□□ 0.96
SIX4Q9UIU6 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SIX4Q9UIU6 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC21.04■□□□□ 0.96
SIX4Q9UIU6 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC21.04■□□□□ 0.96
SIX4Q9UIU6 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
SIX4Q9UIU6 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SIX4Q9UIU6 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
SIX4Q9UIU6 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SIX4Q9UIU6 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC21.03■□□□□ 0.96
SIX4Q9UIU6 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SIX4Q9UIU6 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SIX4Q9UIU6 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SIX4Q9UIU6 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SIX4Q9UIU6 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SIX4Q9UIU6 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SIX4Q9UIU6 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SIX4Q9UIU6 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
SIX4Q9UIU6 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC21.03■□□□□ 0.96
SIX4Q9UIU6 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC21.03■□□□□ 0.96
SIX4Q9UIU6 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SIX4Q9UIU6 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
SIX4Q9UIU6 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SIX4Q9UIU6 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
SIX4Q9UIU6 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SIX4Q9UIU6 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC21.03■□□□□ 0.96
SIX4Q9UIU6 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC21.02■□□□□ 0.96
SIX4Q9UIU6 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC21.02■□□□□ 0.96
SIX4Q9UIU6 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC21.02■□□□□ 0.96
SIX4Q9UIU6 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SIX4Q9UIU6 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SIX4Q9UIU6 AFG3L1P-217ENST00000557444 2447 ntBASIC21.02■□□□□ 0.96
SIX4Q9UIU6 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
SIX4Q9UIU6 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC21.02■□□□□ 0.96
SIX4Q9UIU6 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC21.02■□□□□ 0.96
SIX4Q9UIU6 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC21.02■□□□□ 0.96
SIX4Q9UIU6 AL353708.3-201ENST00000610272 989 ntBASIC21.02■□□□□ 0.96
SIX4Q9UIU6 AC113410.3-201ENST00000623366 203 ntBASIC21.02■□□□□ 0.96
SIX4Q9UIU6 AL049637.2-201ENST00000641778 930 ntBASIC21.02■□□□□ 0.96
SIX4Q9UIU6 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC21.02■□□□□ 0.96
SIX4Q9UIU6 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SIX4Q9UIU6 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SIX4Q9UIU6 BID-204ENST00000399767 2129 ntTSL 2 BASIC21.02■□□□□ 0.96
SIX4Q9UIU6 KRT8P8-201ENST00000434750 1448 ntBASIC21.02■□□□□ 0.96
SIX4Q9UIU6 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC21.02■□□□□ 0.96
SIX4Q9UIU6 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
SIX4Q9UIU6 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC21.02■□□□□ 0.95
SIX4Q9UIU6 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
SIX4Q9UIU6 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
SIX4Q9UIU6 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SIX4Q9UIU6 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
SIX4Q9UIU6 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
SIX4Q9UIU6 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SIX4Q9UIU6 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
SIX4Q9UIU6 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
SIX4Q9UIU6 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC21.01■□□□□ 0.95
SIX4Q9UIU6 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC21.01■□□□□ 0.95
SIX4Q9UIU6 SAPCD2P4-201ENST00000424595 1171 ntBASIC21.01■□□□□ 0.95
SIX4Q9UIU6 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SIX4Q9UIU6 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC21.01■□□□□ 0.95
SIX4Q9UIU6 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC21.01■□□□□ 0.95
SIX4Q9UIU6 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms