Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 TMEM179-206ENST00000616017 1645 ntBASIC17.47■□□□□ 0.39
CLCF1Q9UBD9 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLCF1Q9UBD9 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLCF1Q9UBD9 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLCF1Q9UBD9 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CLCF1Q9UBD9 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC17.47■□□□□ 0.39
CLCF1Q9UBD9 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC17.47■□□□□ 0.39
CLCF1Q9UBD9 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC17.47■□□□□ 0.39
CLCF1Q9UBD9 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
CLCF1Q9UBD9 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
CLCF1Q9UBD9 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC17.47■□□□□ 0.39
CLCF1Q9UBD9 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLCF1Q9UBD9 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLCF1Q9UBD9 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLCF1Q9UBD9 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CLCF1Q9UBD9 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLCF1Q9UBD9 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLCF1Q9UBD9 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLCF1Q9UBD9 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CLCF1Q9UBD9 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
CLCF1Q9UBD9 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLCF1Q9UBD9 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC17.47■□□□□ 0.39
CLCF1Q9UBD9 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC17.46■□□□□ 0.39
CLCF1Q9UBD9 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLCF1Q9UBD9 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLCF1Q9UBD9 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLCF1Q9UBD9 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLCF1Q9UBD9 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLCF1Q9UBD9 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CLCF1Q9UBD9 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC17.46■□□□□ 0.39
CLCF1Q9UBD9 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC17.46■□□□□ 0.39
CLCF1Q9UBD9 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLCF1Q9UBD9 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CLCF1Q9UBD9 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC17.46■□□□□ 0.39
CLCF1Q9UBD9 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CLCF1Q9UBD9 REXO1L10P-201ENST00000615707 1290 ntBASIC17.46■□□□□ 0.39
CLCF1Q9UBD9 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CLCF1Q9UBD9 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC17.46■□□□□ 0.39
CLCF1Q9UBD9 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLCF1Q9UBD9 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLCF1Q9UBD9 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CLCF1Q9UBD9 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLCF1Q9UBD9 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CLCF1Q9UBD9 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC17.46■□□□□ 0.38
CLCF1Q9UBD9 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.38
CLCF1Q9UBD9 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.38
CLCF1Q9UBD9 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLCF1Q9UBD9 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CLCF1Q9UBD9 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC17.45■□□□□ 0.38
CLCF1Q9UBD9 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLCF1Q9UBD9 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
CLCF1Q9UBD9 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLCF1Q9UBD9 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
CLCF1Q9UBD9 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CLCF1Q9UBD9 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CLCF1Q9UBD9 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC17.45■□□□□ 0.38
CLCF1Q9UBD9 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLCF1Q9UBD9 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLCF1Q9UBD9 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLCF1Q9UBD9 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC17.45■□□□□ 0.38
CLCF1Q9UBD9 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC17.45■□□□□ 0.38
CLCF1Q9UBD9 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC17.45■□□□□ 0.38
CLCF1Q9UBD9 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC17.45■□□□□ 0.38
CLCF1Q9UBD9 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC17.45■□□□□ 0.38
CLCF1Q9UBD9 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLCF1Q9UBD9 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLCF1Q9UBD9 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CLCF1Q9UBD9 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC17.44■□□□□ 0.38
CLCF1Q9UBD9 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLCF1Q9UBD9 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC17.44■□□□□ 0.38
CLCF1Q9UBD9 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC17.44■□□□□ 0.38
CLCF1Q9UBD9 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
CLCF1Q9UBD9 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLCF1Q9UBD9 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLCF1Q9UBD9 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLCF1Q9UBD9 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CLCF1Q9UBD9 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC17.44■□□□□ 0.38
CLCF1Q9UBD9 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC17.44■□□□□ 0.38
CLCF1Q9UBD9 AC211429.1-201ENST00000415277 523 ntBASIC17.44■□□□□ 0.38
CLCF1Q9UBD9 AC087499.1-201ENST00000418141 1075 ntBASIC17.44■□□□□ 0.38
CLCF1Q9UBD9 PPP1R14BP5-201ENST00000440334 435 ntBASIC17.44■□□□□ 0.38
CLCF1Q9UBD9 RBM17P1-201ENST00000453646 1190 ntBASIC17.44■□□□□ 0.38
CLCF1Q9UBD9 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC17.44■□□□□ 0.38
CLCF1Q9UBD9 AC116562.2-201ENST00000507042 360 ntBASIC17.44■□□□□ 0.38
CLCF1Q9UBD9 AC026271.3-201ENST00000571884 352 ntBASIC17.44■□□□□ 0.38
CLCF1Q9UBD9 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC17.44■□□□□ 0.38
CLCF1Q9UBD9 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CLCF1Q9UBD9 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CLCF1Q9UBD9 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC17.44■□□□□ 0.38
CLCF1Q9UBD9 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CLCF1Q9UBD9 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLCF1Q9UBD9 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLCF1Q9UBD9 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC17.44■□□□□ 0.38
CLCF1Q9UBD9 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLCF1Q9UBD9 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CLCF1Q9UBD9 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
CLCF1Q9UBD9 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CLCF1Q9UBD9 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CLCF1Q9UBD9 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CLCF1Q9UBD9 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 63.4 ms