Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
DDX28Q9NUL7 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
DDX28Q9NUL7 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
DDX28Q9NUL7 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC17.92■□□□□ 0.46
DDX28Q9NUL7 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
DDX28Q9NUL7 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC17.92■□□□□ 0.46
DDX28Q9NUL7 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC17.92■□□□□ 0.46
DDX28Q9NUL7 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
DDX28Q9NUL7 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
DDX28Q9NUL7 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
DDX28Q9NUL7 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
DDX28Q9NUL7 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
DDX28Q9NUL7 AL512408.1-201ENST00000569378 2000 ntBASIC17.91■□□□□ 0.46
DDX28Q9NUL7 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
DDX28Q9NUL7 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
DDX28Q9NUL7 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
DDX28Q9NUL7 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC17.91■□□□□ 0.46
DDX28Q9NUL7 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
DDX28Q9NUL7 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC17.91■□□□□ 0.46
DDX28Q9NUL7 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
DDX28Q9NUL7 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
DDX28Q9NUL7 SAPCD2P1-201ENST00000395413 1184 ntBASIC17.91■□□□□ 0.46
DDX28Q9NUL7 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC17.91■□□□□ 0.46
DDX28Q9NUL7 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
DDX28Q9NUL7 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC17.91■□□□□ 0.46
DDX28Q9NUL7 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC17.91■□□□□ 0.46
DDX28Q9NUL7 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
DDX28Q9NUL7 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
DDX28Q9NUL7 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
DDX28Q9NUL7 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
DDX28Q9NUL7 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
DDX28Q9NUL7 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
DDX28Q9NUL7 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
DDX28Q9NUL7 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
DDX28Q9NUL7 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC17.91■□□□□ 0.46
DDX28Q9NUL7 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
DDX28Q9NUL7 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
DDX28Q9NUL7 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
DDX28Q9NUL7 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
DDX28Q9NUL7 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
DDX28Q9NUL7 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
DDX28Q9NUL7 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC17.9■□□□□ 0.46
DDX28Q9NUL7 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
DDX28Q9NUL7 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC17.9■□□□□ 0.46
DDX28Q9NUL7 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC17.9■□□□□ 0.46
DDX28Q9NUL7 USP39-204ENST00000409766 2033 ntTSL 2 BASIC17.9■□□□□ 0.46
DDX28Q9NUL7 AL162377.1-201ENST00000618844 1793 ntBASIC17.9■□□□□ 0.46
DDX28Q9NUL7 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
DDX28Q9NUL7 PARP1-202ENST00000366792 553 ntTSL 3 BASIC17.9■□□□□ 0.46
DDX28Q9NUL7 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
DDX28Q9NUL7 AC004911.1-201ENST00000416316 871 ntBASIC17.9■□□□□ 0.46
DDX28Q9NUL7 AC007322.3-201ENST00000426526 701 ntBASIC17.9■□□□□ 0.46
DDX28Q9NUL7 MIR2861-201ENST00000636310 90 ntBASIC17.9■□□□□ 0.46
DDX28Q9NUL7 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
DDX28Q9NUL7 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC17.9■□□□□ 0.46
DDX28Q9NUL7 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC17.9■□□□□ 0.46
DDX28Q9NUL7 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC17.9■□□□□ 0.46
DDX28Q9NUL7 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
DDX28Q9NUL7 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
DDX28Q9NUL7 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
DDX28Q9NUL7 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
DDX28Q9NUL7 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
DDX28Q9NUL7 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
DDX28Q9NUL7 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC17.9■□□□□ 0.46
DDX28Q9NUL7 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC17.89■□□□□ 0.46
DDX28Q9NUL7 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC17.89■□□□□ 0.46
DDX28Q9NUL7 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC17.89■□□□□ 0.45
DDX28Q9NUL7 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
DDX28Q9NUL7 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC17.89■□□□□ 0.45
DDX28Q9NUL7 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
DDX28Q9NUL7 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
DDX28Q9NUL7 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
DDX28Q9NUL7 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
DDX28Q9NUL7 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
DDX28Q9NUL7 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
DDX28Q9NUL7 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
DDX28Q9NUL7 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
DDX28Q9NUL7 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
DDX28Q9NUL7 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
DDX28Q9NUL7 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
DDX28Q9NUL7 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC17.89■□□□□ 0.45
DDX28Q9NUL7 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
DDX28Q9NUL7 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC17.89■□□□□ 0.45
DDX28Q9NUL7 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC17.89■□□□□ 0.45
DDX28Q9NUL7 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC17.89■□□□□ 0.45
DDX28Q9NUL7 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
DDX28Q9NUL7 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
DDX28Q9NUL7 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
DDX28Q9NUL7 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
DDX28Q9NUL7 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC17.89■□□□□ 0.45
DDX28Q9NUL7 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
DDX28Q9NUL7 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
DDX28Q9NUL7 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC17.88■□□□□ 0.45
DDX28Q9NUL7 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
DDX28Q9NUL7 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
DDX28Q9NUL7 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
DDX28Q9NUL7 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
DDX28Q9NUL7 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
DDX28Q9NUL7 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
DDX28Q9NUL7 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 10.9 ms