Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CISHQ9NSE2 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
CISHQ9NSE2 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CISHQ9NSE2 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CISHQ9NSE2 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CISHQ9NSE2 PWWP2AP1-201ENST00000429776 2273 ntBASIC20.96■□□□□ 0.95
CISHQ9NSE2 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CISHQ9NSE2 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CISHQ9NSE2 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC20.96■□□□□ 0.95
CISHQ9NSE2 PRORSD1P-201ENST00000295112 541 ntBASIC20.96■□□□□ 0.95
CISHQ9NSE2 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
CISHQ9NSE2 KRASP1-201ENST00000407852 552 ntBASIC20.96■□□□□ 0.95
CISHQ9NSE2 AC239809.2-201ENST00000415381 517 ntBASIC20.96■□□□□ 0.95
CISHQ9NSE2 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC20.96■□□□□ 0.95
CISHQ9NSE2 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CISHQ9NSE2 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC20.96■□□□□ 0.95
CISHQ9NSE2 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC20.96■□□□□ 0.95
CISHQ9NSE2 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
CISHQ9NSE2 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC20.96■□□□□ 0.95
CISHQ9NSE2 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CISHQ9NSE2 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC20.96■□□□□ 0.95
CISHQ9NSE2 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
CISHQ9NSE2 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CISHQ9NSE2 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC20.96■□□□□ 0.95
CISHQ9NSE2 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
CISHQ9NSE2 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
CISHQ9NSE2 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CISHQ9NSE2 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC20.95■□□□□ 0.94
CISHQ9NSE2 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CISHQ9NSE2 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC20.95■□□□□ 0.94
CISHQ9NSE2 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC20.95■□□□□ 0.94
CISHQ9NSE2 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC20.95■□□□□ 0.94
CISHQ9NSE2 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC20.95■□□□□ 0.94
CISHQ9NSE2 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC20.95■□□□□ 0.94
CISHQ9NSE2 AC124016.1-201ENST00000609552 612 ntBASIC20.95■□□□□ 0.94
CISHQ9NSE2 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
CISHQ9NSE2 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC20.95■□□□□ 0.94
CISHQ9NSE2 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC20.95■□□□□ 0.94
CISHQ9NSE2 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
CISHQ9NSE2 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC20.95■□□□□ 0.94
CISHQ9NSE2 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC20.95■□□□□ 0.94
CISHQ9NSE2 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CISHQ9NSE2 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CISHQ9NSE2 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC20.95■□□□□ 0.94
CISHQ9NSE2 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CISHQ9NSE2 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CISHQ9NSE2 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
CISHQ9NSE2 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
CISHQ9NSE2 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
CISHQ9NSE2 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
CISHQ9NSE2 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
CISHQ9NSE2 ISG20-202ENST00000379224 540 ntTSL 3 BASIC20.94■□□□□ 0.94
CISHQ9NSE2 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC20.94■□□□□ 0.94
CISHQ9NSE2 C1QBPP2-201ENST00000528754 825 ntBASIC20.94■□□□□ 0.94
CISHQ9NSE2 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC20.94■□□□□ 0.94
CISHQ9NSE2 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
CISHQ9NSE2 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CISHQ9NSE2 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.94■□□□□ 0.94
CISHQ9NSE2 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC20.94■□□□□ 0.94
CISHQ9NSE2 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CISHQ9NSE2 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC20.94■□□□□ 0.94
CISHQ9NSE2 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
CISHQ9NSE2 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
CISHQ9NSE2 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
CISHQ9NSE2 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CISHQ9NSE2 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CISHQ9NSE2 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CISHQ9NSE2 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CISHQ9NSE2 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC20.93■□□□□ 0.94
CISHQ9NSE2 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CISHQ9NSE2 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC20.93■□□□□ 0.94
CISHQ9NSE2 AC133681.1-201ENST00000465482 601 ntBASIC20.93■□□□□ 0.94
CISHQ9NSE2 KRT18P16-201ENST00000510337 1294 ntBASIC20.93■□□□□ 0.94
CISHQ9NSE2 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC20.93■□□□□ 0.94
CISHQ9NSE2 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC20.93■□□□□ 0.94
CISHQ9NSE2 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC20.93■□□□□ 0.94
CISHQ9NSE2 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CISHQ9NSE2 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CISHQ9NSE2 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
CISHQ9NSE2 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CISHQ9NSE2 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC20.93■□□□□ 0.94
CISHQ9NSE2 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
CISHQ9NSE2 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CISHQ9NSE2 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CISHQ9NSE2 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
CISHQ9NSE2 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CISHQ9NSE2 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC20.93■□□□□ 0.94
CISHQ9NSE2 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC20.93■□□□□ 0.94
CISHQ9NSE2 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC20.92■□□□□ 0.94
CISHQ9NSE2 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
CISHQ9NSE2 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CISHQ9NSE2 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CISHQ9NSE2 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CISHQ9NSE2 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CISHQ9NSE2 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC20.92■□□□□ 0.94
CISHQ9NSE2 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CISHQ9NSE2 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC20.92■□□□□ 0.94
CISHQ9NSE2 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
CISHQ9NSE2 RPPH1-201ENST00000516869 333 ntBASIC20.92■□□□□ 0.94
CISHQ9NSE2 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms