Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
SIX2Q9NPC8 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC21.09■□□□□ 0.97
SIX2Q9NPC8 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SIX2Q9NPC8 HLA-L-209ENST00000420110 1011 ntBASIC21.09■□□□□ 0.97
SIX2Q9NPC8 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
SIX2Q9NPC8 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC21.09■□□□□ 0.97
SIX2Q9NPC8 OR2A1-AS1-207ENST00000486094 819 ntBASIC21.09■□□□□ 0.97
SIX2Q9NPC8 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC21.09■□□□□ 0.97
SIX2Q9NPC8 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
SIX2Q9NPC8 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
SIX2Q9NPC8 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SIX2Q9NPC8 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SIX2Q9NPC8 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC21.09■□□□□ 0.97
SIX2Q9NPC8 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
SIX2Q9NPC8 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SIX2Q9NPC8 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
SIX2Q9NPC8 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SIX2Q9NPC8 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SIX2Q9NPC8 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SIX2Q9NPC8 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SIX2Q9NPC8 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
SIX2Q9NPC8 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC21.08■□□□□ 0.97
SIX2Q9NPC8 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
SIX2Q9NPC8 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SIX2Q9NPC8 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
SIX2Q9NPC8 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SIX2Q9NPC8 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SIX2Q9NPC8 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SIX2Q9NPC8 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC21.08■□□□□ 0.97
SIX2Q9NPC8 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC21.08■□□□□ 0.97
SIX2Q9NPC8 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC21.08■□□□□ 0.97
SIX2Q9NPC8 INO80E-214ENST00000620599 515 ntTSL 2 BASIC21.08■□□□□ 0.97
SIX2Q9NPC8 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
SIX2Q9NPC8 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
SIX2Q9NPC8 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC21.08■□□□□ 0.96
SIX2Q9NPC8 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.96
SIX2Q9NPC8 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
SIX2Q9NPC8 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC21.07■□□□□ 0.96
SIX2Q9NPC8 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SIX2Q9NPC8 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SIX2Q9NPC8 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
SIX2Q9NPC8 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SIX2Q9NPC8 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
SIX2Q9NPC8 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC21.07■□□□□ 0.96
SIX2Q9NPC8 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SIX2Q9NPC8 AP000974.1-201ENST00000623909 2387 ntBASIC21.07■□□□□ 0.96
SIX2Q9NPC8 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC21.07■□□□□ 0.96
SIX2Q9NPC8 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC21.07■□□□□ 0.96
SIX2Q9NPC8 KLF13-207ENST00000560473 489 ntTSL 3 BASIC21.07■□□□□ 0.96
SIX2Q9NPC8 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SIX2Q9NPC8 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
SIX2Q9NPC8 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SIX2Q9NPC8 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC21.07■□□□□ 0.96
SIX2Q9NPC8 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SIX2Q9NPC8 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SIX2Q9NPC8 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SIX2Q9NPC8 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
SIX2Q9NPC8 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
SIX2Q9NPC8 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SIX2Q9NPC8 GOLGA6L3-201ENST00000507199 1679 ntBASIC21.06■□□□□ 0.96
SIX2Q9NPC8 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SIX2Q9NPC8 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SIX2Q9NPC8 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
SIX2Q9NPC8 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SIX2Q9NPC8 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SIX2Q9NPC8 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
SIX2Q9NPC8 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SIX2Q9NPC8 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
SIX2Q9NPC8 AL355802.2-201ENST00000402069 882 ntBASIC21.06■□□□□ 0.96
SIX2Q9NPC8 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SIX2Q9NPC8 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SIX2Q9NPC8 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC21.06■□□□□ 0.96
SIX2Q9NPC8 ABHD17AP6-201ENST00000458502 1044 ntBASIC21.06■□□□□ 0.96
SIX2Q9NPC8 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC21.06■□□□□ 0.96
SIX2Q9NPC8 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
SIX2Q9NPC8 MAX-217ENST00000557277 728 ntTSL 3 BASIC21.06■□□□□ 0.96
SIX2Q9NPC8 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC21.06■□□□□ 0.96
SIX2Q9NPC8 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
SIX2Q9NPC8 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC21.06■□□□□ 0.96
SIX2Q9NPC8 AL121906.2-201ENST00000621597 723 ntBASIC21.06■□□□□ 0.96
SIX2Q9NPC8 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
SIX2Q9NPC8 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SIX2Q9NPC8 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC21.06■□□□□ 0.96
SIX2Q9NPC8 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SIX2Q9NPC8 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SIX2Q9NPC8 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SIX2Q9NPC8 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC21.06■□□□□ 0.96
SIX2Q9NPC8 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC21.05■□□□□ 0.96
SIX2Q9NPC8 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SIX2Q9NPC8 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SIX2Q9NPC8 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SIX2Q9NPC8 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SIX2Q9NPC8 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC21.05■□□□□ 0.96
SIX2Q9NPC8 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SIX2Q9NPC8 AC008687.6-201ENST00000596318 630 ntBASIC21.05■□□□□ 0.96
SIX2Q9NPC8 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SIX2Q9NPC8 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC21.05■□□□□ 0.96
SIX2Q9NPC8 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC21.05■□□□□ 0.96
SIX2Q9NPC8 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SIX2Q9NPC8 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms