Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PAAF1Q9BRP4 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
PAAF1Q9BRP4 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC20.98■□□□□ 0.95
PAAF1Q9BRP4 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
PAAF1Q9BRP4 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
PAAF1Q9BRP4 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC20.98■□□□□ 0.95
PAAF1Q9BRP4 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC20.98■□□□□ 0.95
PAAF1Q9BRP4 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
PAAF1Q9BRP4 AC008040.2-201ENST00000461049 708 ntBASIC20.98■□□□□ 0.95
PAAF1Q9BRP4 RN7SL850P-201ENST00000579959 291 ntBASIC20.98■□□□□ 0.95
PAAF1Q9BRP4 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PAAF1Q9BRP4 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC20.98■□□□□ 0.95
PAAF1Q9BRP4 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PAAF1Q9BRP4 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
PAAF1Q9BRP4 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC20.98■□□□□ 0.95
PAAF1Q9BRP4 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PAAF1Q9BRP4 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
PAAF1Q9BRP4 AP001271.2-201ENST00000624018 1556 ntBASIC20.97■□□□□ 0.95
PAAF1Q9BRP4 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
PAAF1Q9BRP4 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
PAAF1Q9BRP4 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PAAF1Q9BRP4 LINC01006-201ENST00000333319 2292 ntBASIC20.97■□□□□ 0.95
PAAF1Q9BRP4 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PAAF1Q9BRP4 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC20.97■□□□□ 0.95
PAAF1Q9BRP4 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
PAAF1Q9BRP4 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC20.97■□□□□ 0.95
PAAF1Q9BRP4 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PAAF1Q9BRP4 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC20.97■□□□□ 0.95
PAAF1Q9BRP4 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC20.97■□□□□ 0.95
PAAF1Q9BRP4 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC20.97■□□□□ 0.95
PAAF1Q9BRP4 AC131212.4-201ENST00000623606 975 ntBASIC20.97■□□□□ 0.95
PAAF1Q9BRP4 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
PAAF1Q9BRP4 USP48-205ENST00000421625 2818 ntTSL 2 BASIC20.97■□□□□ 0.95
PAAF1Q9BRP4 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
PAAF1Q9BRP4 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
PAAF1Q9BRP4 LINC01568-207ENST00000641790 1380 ntBASIC20.97■□□□□ 0.95
PAAF1Q9BRP4 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC20.96■□□□□ 0.95
PAAF1Q9BRP4 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
PAAF1Q9BRP4 LINC01465-201ENST00000408887 1940 ntBASIC20.96■□□□□ 0.95
PAAF1Q9BRP4 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC20.96■□□□□ 0.95
PAAF1Q9BRP4 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC20.96■□□□□ 0.95
PAAF1Q9BRP4 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC20.96■□□□□ 0.95
PAAF1Q9BRP4 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC20.96■□□□□ 0.95
PAAF1Q9BRP4 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
PAAF1Q9BRP4 DUT-205ENST00000558813 769 ntTSL 2 BASIC20.96■□□□□ 0.95
PAAF1Q9BRP4 NAPSB-206ENST00000562112 1266 ntBASIC20.96■□□□□ 0.95
PAAF1Q9BRP4 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC20.96■□□□□ 0.95
PAAF1Q9BRP4 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC20.96■□□□□ 0.95
PAAF1Q9BRP4 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC20.96■□□□□ 0.95
PAAF1Q9BRP4 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PAAF1Q9BRP4 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
PAAF1Q9BRP4 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
PAAF1Q9BRP4 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PAAF1Q9BRP4 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC20.96■□□□□ 0.95
PAAF1Q9BRP4 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
PAAF1Q9BRP4 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC20.96■□□□□ 0.95
PAAF1Q9BRP4 AC099778.1-201ENST00000568593 1911 ntBASIC20.96■□□□□ 0.95
PAAF1Q9BRP4 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PAAF1Q9BRP4 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PAAF1Q9BRP4 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
PAAF1Q9BRP4 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PAAF1Q9BRP4 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC20.95■□□□□ 0.94
PAAF1Q9BRP4 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PAAF1Q9BRP4 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PAAF1Q9BRP4 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC20.95■□□□□ 0.94
PAAF1Q9BRP4 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC20.95■□□□□ 0.94
PAAF1Q9BRP4 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PAAF1Q9BRP4 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PAAF1Q9BRP4 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PAAF1Q9BRP4 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC20.95■□□□□ 0.94
PAAF1Q9BRP4 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
PAAF1Q9BRP4 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC20.95■□□□□ 0.94
PAAF1Q9BRP4 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PAAF1Q9BRP4 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC20.95■□□□□ 0.94
PAAF1Q9BRP4 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC20.95■□□□□ 0.94
PAAF1Q9BRP4 FDX2-206ENST00000492239 773 ntTSL 2 BASIC20.95■□□□□ 0.94
PAAF1Q9BRP4 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC20.95■□□□□ 0.94
PAAF1Q9BRP4 TK2-213ENST00000563369 882 ntTSL 5 BASIC20.95■□□□□ 0.94
PAAF1Q9BRP4 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
PAAF1Q9BRP4 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC20.95■□□□□ 0.94
PAAF1Q9BRP4 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC20.95■□□□□ 0.94
PAAF1Q9BRP4 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC20.95■□□□□ 0.94
PAAF1Q9BRP4 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PAAF1Q9BRP4 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC20.95■□□□□ 0.94
PAAF1Q9BRP4 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
PAAF1Q9BRP4 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC20.95■□□□□ 0.94
PAAF1Q9BRP4 KRT8P8-201ENST00000434750 1448 ntBASIC20.95■□□□□ 0.94
PAAF1Q9BRP4 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PAAF1Q9BRP4 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PAAF1Q9BRP4 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
PAAF1Q9BRP4 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
PAAF1Q9BRP4 RCC2P6-201ENST00000526625 1557 ntBASIC20.94■□□□□ 0.94
PAAF1Q9BRP4 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC20.94■□□□□ 0.94
PAAF1Q9BRP4 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC20.94■□□□□ 0.94
PAAF1Q9BRP4 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
PAAF1Q9BRP4 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC20.94■□□□□ 0.94
PAAF1Q9BRP4 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC20.94■□□□□ 0.94
PAAF1Q9BRP4 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PAAF1Q9BRP4 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
PAAF1Q9BRP4 AC130371.2-201ENST00000619443 611 ntBASIC20.94■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms