Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CFAP54Q96N23 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CFAP54Q96N23 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
CFAP54Q96N23 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC19.33■□□□□ 0.68
CFAP54Q96N23 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC19.33■□□□□ 0.68
CFAP54Q96N23 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
CFAP54Q96N23 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC19.33■□□□□ 0.68
CFAP54Q96N23 DYM-203ENST00000442713 2147 ntTSL 2 BASIC19.33■□□□□ 0.68
CFAP54Q96N23 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CFAP54Q96N23 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CFAP54Q96N23 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC19.32■□□□□ 0.68
CFAP54Q96N23 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
CFAP54Q96N23 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CFAP54Q96N23 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
CFAP54Q96N23 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CFAP54Q96N23 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
CFAP54Q96N23 LY6E-213ENST00000522528 606 ntTSL 3 BASIC19.32■□□□□ 0.68
CFAP54Q96N23 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CFAP54Q96N23 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC19.32■□□□□ 0.68
CFAP54Q96N23 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC19.32■□□□□ 0.68
CFAP54Q96N23 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
CFAP54Q96N23 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CFAP54Q96N23 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
CFAP54Q96N23 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
CFAP54Q96N23 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC19.32■□□□□ 0.68
CFAP54Q96N23 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC19.31■□□□□ 0.68
CFAP54Q96N23 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CFAP54Q96N23 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
CFAP54Q96N23 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC19.31■□□□□ 0.68
CFAP54Q96N23 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC19.31■□□□□ 0.68
CFAP54Q96N23 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CFAP54Q96N23 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC19.31■□□□□ 0.68
CFAP54Q96N23 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CFAP54Q96N23 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
CFAP54Q96N23 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CFAP54Q96N23 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC19.31■□□□□ 0.68
CFAP54Q96N23 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CFAP54Q96N23 ZNF444P1-201ENST00000559497 298 ntBASIC19.31■□□□□ 0.68
CFAP54Q96N23 AF106564.1-201ENST00000607058 2553 ntBASIC19.31■□□□□ 0.68
CFAP54Q96N23 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC19.31■□□□□ 0.68
CFAP54Q96N23 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CFAP54Q96N23 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
CFAP54Q96N23 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC19.31■□□□□ 0.68
CFAP54Q96N23 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CFAP54Q96N23 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
CFAP54Q96N23 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
CFAP54Q96N23 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC19.31■□□□□ 0.68
CFAP54Q96N23 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CFAP54Q96N23 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CFAP54Q96N23 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CFAP54Q96N23 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CFAP54Q96N23 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC19.3■□□□□ 0.68
CFAP54Q96N23 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CFAP54Q96N23 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC19.3■□□□□ 0.68
CFAP54Q96N23 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC19.3■□□□□ 0.68
CFAP54Q96N23 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
CFAP54Q96N23 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CFAP54Q96N23 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CFAP54Q96N23 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
CFAP54Q96N23 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC19.3■□□□□ 0.68
CFAP54Q96N23 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
CFAP54Q96N23 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC19.3■□□□□ 0.68
CFAP54Q96N23 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CFAP54Q96N23 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CFAP54Q96N23 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC19.3■□□□□ 0.68
CFAP54Q96N23 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CFAP54Q96N23 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CFAP54Q96N23 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC19.3■□□□□ 0.68
CFAP54Q96N23 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CFAP54Q96N23 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CFAP54Q96N23 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CFAP54Q96N23 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CFAP54Q96N23 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CFAP54Q96N23 STX5-203ENST00000394690 1568 ntTSL 5 BASIC19.29■□□□□ 0.68
CFAP54Q96N23 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CFAP54Q96N23 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC19.29■□□□□ 0.68
CFAP54Q96N23 AC023632.3-201ENST00000521633 145 ntBASIC19.29■□□□□ 0.68
CFAP54Q96N23 SLC25A1P1-201ENST00000528351 927 ntBASIC19.29■□□□□ 0.68
CFAP54Q96N23 AP000692.2-201ENST00000608391 879 ntBASIC19.29■□□□□ 0.68
CFAP54Q96N23 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CFAP54Q96N23 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CFAP54Q96N23 MRPL3P1-201ENST00000400109 1033 ntBASIC19.29■□□□□ 0.68
CFAP54Q96N23 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC19.29■□□□□ 0.68
CFAP54Q96N23 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC19.29■□□□□ 0.68
CFAP54Q96N23 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CFAP54Q96N23 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CFAP54Q96N23 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CFAP54Q96N23 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CFAP54Q96N23 AC127496.7-201ENST00000625110 1798 ntBASIC19.29■□□□□ 0.68
CFAP54Q96N23 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
CFAP54Q96N23 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CFAP54Q96N23 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CFAP54Q96N23 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC19.28■□□□□ 0.68
CFAP54Q96N23 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CFAP54Q96N23 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC19.28■□□□□ 0.68
CFAP54Q96N23 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC19.28■□□□□ 0.68
CFAP54Q96N23 AC140113.3-201ENST00000605663 199 ntBASIC19.28■□□□□ 0.68
CFAP54Q96N23 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CFAP54Q96N23 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CFAP54Q96N23 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms