Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 BID-203ENST00000399765 1879 ntTSL 2 BASIC18.9■□□□□ 0.62
CLIP3Q96DZ5 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC18.9■□□□□ 0.62
CLIP3Q96DZ5 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CLIP3Q96DZ5 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CLIP3Q96DZ5 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC18.9■□□□□ 0.62
CLIP3Q96DZ5 AC092720.2-201ENST00000602388 1665 ntBASIC18.9■□□□□ 0.62
CLIP3Q96DZ5 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CLIP3Q96DZ5 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
CLIP3Q96DZ5 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CLIP3Q96DZ5 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CLIP3Q96DZ5 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CLIP3Q96DZ5 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CLIP3Q96DZ5 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC18.9■□□□□ 0.62
CLIP3Q96DZ5 REXO2-216ENST00000544196 452 ntTSL 3 BASIC18.9■□□□□ 0.62
CLIP3Q96DZ5 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CLIP3Q96DZ5 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC18.9■□□□□ 0.62
CLIP3Q96DZ5 AL049637.2-201ENST00000641778 930 ntBASIC18.9■□□□□ 0.62
CLIP3Q96DZ5 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CLIP3Q96DZ5 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CLIP3Q96DZ5 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
CLIP3Q96DZ5 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
CLIP3Q96DZ5 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CLIP3Q96DZ5 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
CLIP3Q96DZ5 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC18.89■□□□□ 0.62
CLIP3Q96DZ5 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC18.89■□□□□ 0.62
CLIP3Q96DZ5 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
CLIP3Q96DZ5 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CLIP3Q96DZ5 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CLIP3Q96DZ5 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CLIP3Q96DZ5 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC18.89■□□□□ 0.61
CLIP3Q96DZ5 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CLIP3Q96DZ5 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC18.89■□□□□ 0.61
CLIP3Q96DZ5 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC18.89■□□□□ 0.61
CLIP3Q96DZ5 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
CLIP3Q96DZ5 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC18.89■□□□□ 0.61
CLIP3Q96DZ5 RARRES2P10-201ENST00000564312 460 ntBASIC18.89■□□□□ 0.61
CLIP3Q96DZ5 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CLIP3Q96DZ5 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
CLIP3Q96DZ5 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CLIP3Q96DZ5 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC18.89■□□□□ 0.61
CLIP3Q96DZ5 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CLIP3Q96DZ5 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
CLIP3Q96DZ5 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC18.89■□□□□ 0.61
CLIP3Q96DZ5 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
CLIP3Q96DZ5 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLIP3Q96DZ5 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC18.88■□□□□ 0.61
CLIP3Q96DZ5 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLIP3Q96DZ5 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC18.88■□□□□ 0.61
CLIP3Q96DZ5 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC18.88■□□□□ 0.61
CLIP3Q96DZ5 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CLIP3Q96DZ5 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLIP3Q96DZ5 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLIP3Q96DZ5 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLIP3Q96DZ5 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
CLIP3Q96DZ5 TSPY7P-201ENST00000431358 1114 ntBASIC18.88■□□□□ 0.61
CLIP3Q96DZ5 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLIP3Q96DZ5 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CLIP3Q96DZ5 AC004264.1-201ENST00000608354 794 ntBASIC18.88■□□□□ 0.61
CLIP3Q96DZ5 KRT17P2-201ENST00000300992 1314 ntBASIC18.88■□□□□ 0.61
CLIP3Q96DZ5 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC18.88■□□□□ 0.61
CLIP3Q96DZ5 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLIP3Q96DZ5 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLIP3Q96DZ5 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLIP3Q96DZ5 AL020996.1-203ENST00000536896 2307 ntBASIC18.88■□□□□ 0.61
CLIP3Q96DZ5 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLIP3Q96DZ5 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CLIP3Q96DZ5 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLIP3Q96DZ5 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CLIP3Q96DZ5 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CLIP3Q96DZ5 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
CLIP3Q96DZ5 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CLIP3Q96DZ5 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CLIP3Q96DZ5 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CLIP3Q96DZ5 TREX2-204ENST00000370212 861 ntTSL 5 BASIC18.87■□□□□ 0.61
CLIP3Q96DZ5 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
CLIP3Q96DZ5 CALM3-202ENST00000391918 702 ntTSL 2 BASIC18.87■□□□□ 0.61
CLIP3Q96DZ5 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
CLIP3Q96DZ5 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CLIP3Q96DZ5 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CLIP3Q96DZ5 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
CLIP3Q96DZ5 KRT16P5-201ENST00000455284 522 ntBASIC18.87■□□□□ 0.61
CLIP3Q96DZ5 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC18.87■□□□□ 0.61
CLIP3Q96DZ5 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CLIP3Q96DZ5 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC18.87■□□□□ 0.61
CLIP3Q96DZ5 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC18.87■□□□□ 0.61
CLIP3Q96DZ5 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CLIP3Q96DZ5 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC18.87■□□□□ 0.61
CLIP3Q96DZ5 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
CLIP3Q96DZ5 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC18.87■□□□□ 0.61
CLIP3Q96DZ5 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CLIP3Q96DZ5 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
CLIP3Q96DZ5 PODN-203ENST00000395871 2744 ntTSL 5 BASIC18.87■□□□□ 0.61
CLIP3Q96DZ5 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CLIP3Q96DZ5 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CLIP3Q96DZ5 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CLIP3Q96DZ5 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CLIP3Q96DZ5 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
CLIP3Q96DZ5 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CLIP3Q96DZ5 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
CLIP3Q96DZ5 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms