Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.756e-7■■□□□ 12.7
DDX55Q8NHQ9 SLC50A1-210ENST00000488609 890 ntTSL 319.67■□□□□ 0.746e-7■■□□□ 12.7
DDX55Q8NHQ9 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.696e-7■■□□□ 12.7
DDX55Q8NHQ9 RPL8-204ENST00000526668 717 ntTSL 1 (best)19.27■□□□□ 0.683e-15■■□□□ 12.7
DDX55Q8NHQ9 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC19.21■□□□□ 0.677e-9■■□□□ 12.7
DDX55Q8NHQ9 HEXA-202ENST00000563762 1174 ntTSL 219.2■□□□□ 0.666e-7■■□□□ 12.7
DDX55Q8NHQ9 RPL8-210ENST00000531767 570 ntTSL 519.13■□□□□ 0.653e-15■■□□□ 12.7
DDX55Q8NHQ9 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.646e-7■■□□□ 12.7
DDX55Q8NHQ9 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.636e-7■■□□□ 12.7
DDX55Q8NHQ9 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.616e-7■■□□□ 12.7
DDX55Q8NHQ9 AKT1-218ENST00000557552 8396 ntTSL 518.83■□□□□ 0.614e-7■■□□□ 12.7
DDX55Q8NHQ9 RPL8-212ENST00000532702 745 ntTSL 218.83■□□□□ 0.63e-15■■□□□ 12.7
DDX55Q8NHQ9 RPL8-205ENST00000527914 551 ntTSL 3 BASIC18.54■□□□□ 0.563e-15■■□□□ 12.7
DDX55Q8NHQ9 MYL6B-202ENST00000548548 887 ntTSL 218.54■□□□□ 0.566e-7■■□□□ 12.7
DDX55Q8NHQ9 HLA-F-226ENST00000484704 1201 nt18.31■□□□□ 0.527e-9■■□□□ 12.7
DDX55Q8NHQ9 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC18.01■□□□□ 0.476e-7■■□□□ 12.7
DDX55Q8NHQ9 NDUFB5-203ENST00000468210 824 ntTSL 217.76■□□□□ 0.434e-13■■□□□ 12.7
DDX55Q8NHQ9 AKT1-213ENST00000555458 705 ntTSL 217.73■□□□□ 0.434e-7■■□□□ 12.7
DDX55Q8NHQ9 FKBP2-203ENST00000449942 613 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.46e-7■■□□□ 12.7
DDX55Q8NHQ9 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.396e-7■■□□□ 12.7
DDX55Q8NHQ9 HLA-F-223ENST00000465459 623 nt17.44■□□□□ 0.387e-9■■□□□ 12.7
DDX55Q8NHQ9 AKT1-207ENST00000554192 922 ntTSL 217.4■□□□□ 0.384e-7■■□□□ 12.7
DDX55Q8NHQ9 HLA-F-229ENST00000489502 489 nt17.32■□□□□ 0.367e-9■■□□□ 12.7
DDX55Q8NHQ9 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.356e-7■■□□□ 12.7
DDX55Q8NHQ9 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.344e-7■■□□□ 12.7
DDX55Q8NHQ9 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC17.17■□□□□ 0.346e-7■■□□□ 12.7
DDX55Q8NHQ9 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.316e-7■■□□□ 12.7
DDX55Q8NHQ9 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.287e-9■■□□□ 12.7
DDX55Q8NHQ9 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.256e-7■■□□□ 12.7
DDX55Q8NHQ9 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.244e-11■■□□□ 12.7
DDX55Q8NHQ9 GNAI2-206ENST00000446079 2086 ntTSL 1 (best)16.5■□□□□ 0.236e-7■■□□□ 12.7
DDX55Q8NHQ9 HLA-F-219ENST00000429294 796 nt16.45■□□□□ 0.227e-9■■□□□ 12.7
DDX55Q8NHQ9 KXD1-211ENST00000599319 707 ntAPPRIS P1 TSL 3 BASIC16.44■□□□□ 0.226e-7■■□□□ 12.7
DDX55Q8NHQ9 MYL6B-208ENST00000550550 322 ntTSL 216.12■□□□□ 0.176e-7■■□□□ 12.7
DDX55Q8NHQ9 HEXA-208ENST00000567027 1353 ntTSL 216■□□□□ 0.156e-7■■□□□ 12.7
DDX55Q8NHQ9 GNAI2-203ENST00000422163 2407 ntTSL 2 BASIC15.69■□□□□ 0.16e-7■■□□□ 12.7
DDX55Q8NHQ9 GNAI2-210ENST00000490122 2445 ntTSL 215.6■□□□□ 0.096e-7■■□□□ 12.7
DDX55Q8NHQ9 HEXA-207ENST00000566672 1397 ntTSL 215.57■□□□□ 0.086e-7■■□□□ 12.7
DDX55Q8NHQ9 HLA-F-230ENST00000606273 579 nt15.48■□□□□ 0.077e-9■■□□□ 12.7
DDX55Q8NHQ9 RPL8-211ENST00000531975 698 ntTSL 315.46■□□□□ 0.073e-15■■□□□ 12.7
DDX55Q8NHQ9 AC119674.2-202ENST00000641109 1675 ntAPPRIS ALT215.44■□□□□ 0.067e-9■■□□□ 12.7
DDX55Q8NHQ9 NINJ1-203ENST00000470314 834 ntTSL 315.09■□□□□ 0.013e-23■■□□□ 12.7
DDX55Q8NHQ9 HLA-F-224ENST00000475996 1505 nt15.07■□□□□ 07e-9■■□□□ 12.7
DDX55Q8NHQ9 CARD10-203ENST00000406271 3127 ntTSL 2 BASIC14.87□□□□□ -0.036e-7■■□□□ 12.7
DDX55Q8NHQ9 HADHB-209ENST00000545822 1870 ntTSL 5 BASIC14.66□□□□□ -0.066e-7■■□□□ 12.7
DDX55Q8NHQ9 HEXA-209ENST00000567159 1582 ntAPPRIS ALT1 TSL 1 (best) BASIC14.6□□□□□ -0.076e-7■■□□□ 12.7
DDX55Q8NHQ9 AC119674.2-203ENST00000642129 1675 ntAPPRIS P5 BASIC14.58□□□□□ -0.077e-9■■□□□ 12.7
DDX55Q8NHQ9 KXD1-214ENST00000600654 895 ntTSL 514.38□□□□□ -0.116e-7■■□□□ 12.7
DDX55Q8NHQ9 RPL8-208ENST00000529163 556 ntTSL 214.29□□□□□ -0.123e-15■■□□□ 12.7
DDX55Q8NHQ9 TBC1D22B-201ENST00000373491 3462 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.126e-7■■□□□ 12.7
DDX55Q8NHQ9 AKT1-219ENST00000610370 3187 ntTSL 214.21□□□□□ -0.134e-7■■□□□ 12.7
DDX55Q8NHQ9 HADHB-201ENST00000317799 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.156e-7■■□□□ 12.7
DDX55Q8NHQ9 HADHB-202ENST00000405867 1588 ntTSL 5 BASIC14.01□□□□□ -0.176e-7■■□□□ 12.7
DDX55Q8NHQ9 ABCA7-211ENST00000529442 520 ntTSL 413.61□□□□□ -0.236e-7■■□□□ 12.7
DDX55Q8NHQ9 SYNJ2-208ENST00000640338 3959 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.256e-7■■□□□ 12.7
DDX55Q8NHQ9 HLA-F-221ENST00000444621 495 nt13.47□□□□□ -0.257e-9■■□□□ 12.7
DDX55Q8NHQ9 SLC50A1-212ENST00000490770 991 ntTSL 312.99□□□□□ -0.336e-7■■□□□ 12.7
DDX55Q8NHQ9 AKT1-208ENST00000554581 3916 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.374e-7■■□□□ 12.7
DDX55Q8NHQ9 MFN2-201ENST00000235329 4539 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.386e-7■■□□□ 12.7
DDX55Q8NHQ9 KXD1-217ENST00000602094 2738 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.396e-7■■□□□ 12.7
DDX55Q8NHQ9 KXD1-216ENST00000601630 1327 ntTSL 3 BASIC12.05□□□□□ -0.486e-7■■□□□ 12.7
DDX55Q8NHQ9 HEXA-215ENST00000569410 1351 ntTSL 512.05□□□□□ -0.486e-7■■□□□ 12.7
DDX55Q8NHQ9 AKT1-202ENST00000402615 3913 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.54e-7■■□□□ 12.7
DDX55Q8NHQ9 SYNJ2-201ENST00000355585 7378 ntAPPRIS P2 TSL 1 (best) BASIC11.19□□□□□ -0.626e-7■■□□□ 12.7
DDX55Q8NHQ9 SYNJ2-207ENST00000638626 7332 ntTSL 1 (best) BASIC11.06□□□□□ -0.646e-7■■□□□ 12.7
DDX55Q8NHQ9 LONRF1-205ENST00000526680 2841 ntTSL 1 (best)10.32□□□□□ -0.764e-11■■□□□ 12.7
DDX55Q8NHQ9 SERPINE2-203ENST00000409840 2569 ntAPPRIS ALT1 TSL 1 (best) BASIC9.75□□□□□ -0.856e-7■■□□□ 12.7
DDX55Q8NHQ9 ERBB3-206ENST00000548709 551 ntTSL 29.27□□□□□ -0.936e-7■■□□□ 12.7
DDX55Q8NHQ9 HEXA-213ENST00000568777 6909 ntTSL 59.23□□□□□ -0.936e-7■■□□□ 12.7
DDX55Q8NHQ9 SERPINE2-208ENST00000473202 5989 ntTSL 29.01□□□□□ -0.976e-7■■□□□ 12.7
DDX55Q8NHQ9 SUPT6H-201ENST00000314616 6523 ntAPPRIS P1 TSL 1 (best) BASIC8.85□□□□□ -0.996e-7■■□□□ 12.7
DDX55Q8NHQ9 HADHB-207ENST00000494615 2883 ntTSL 28.04□□□□□ -1.126e-7■■□□□ 12.7
DDX55Q8NHQ9 INTS2-207ENST00000617492 5805 ntTSL 5 BASIC7.99□□□□□ -1.136e-7■■□□□ 12.7
DDX55Q8NHQ9 INTS2-202ENST00000444766 5878 ntTSL 1 (best) BASIC7.61□□□□□ -1.196e-7■■□□□ 12.7
DDX55Q8NHQ9 MBNL2-203ENST00000376673 4632 ntTSL 1 (best) BASIC7.37□□□□□ -1.236e-7■■□□□ 12.7
DDX55Q8NHQ9 MBNL2-202ENST00000345429 4669 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.36e-7■■□□□ 12.7
DDX55Q8NHQ9 MBNL2-201ENST00000343600 4596 ntTSL 1 (best) BASIC6.88□□□□□ -1.316e-7■■□□□ 12.7
DDX55Q8NHQ9 NDUFB5-207ENST00000476587 635 ntTSL 26.56□□□□□ -1.364e-13■■□□□ 12.7
DDX55Q8NHQ9 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC6□□□□□ -1.456e-7■■□□□ 12.7
DDX55Q8NHQ9 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.454e-13■■□□□ 12.7
DDX55Q8NHQ9 AC119674.2-201ENST00000641494 879 ntAPPRIS ALT25.65□□□□□ -1.57e-9■■□□□ 12.7
DDX55Q8NHQ9 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC4.72□□□□□ -1.656e-7■■□□□ 12.7
DDX55Q8NHQ9 EGFL7-207ENST00000492862 723 ntTSL 522.42■■□□□ 1.187e-8■■□□□ 12.7
DDX55Q8NHQ9 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.795e-9■■□□□ 12.7
DDX55Q8NHQ9 MLF2-209ENST00000541346 1234 ntTSL 521.17■□□□□ 0.985e-9■■□□□ 12.7
DDX55Q8NHQ9 MLF2-205ENST00000537126 851 ntTSL 520.05■□□□□ 0.85e-9■■□□□ 12.7
DDX55Q8NHQ9 SNX3-203ENST00000368979 1537 ntTSL 227.47■■□□□ 1.999e-8■■□□□ 12.7
DDX55Q8NHQ9 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.269e-8■■□□□ 12.7
DDX55Q8NHQ9 SNX3-204ENST00000426155 1072 ntTSL 1 (best) BASIC16.65■□□□□ 0.269e-8■■□□□ 12.7
DDX55Q8NHQ9 MCM3-201ENST00000229854 3083 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.664e-6■■□□□ 12.7
DDX55Q8NHQ9 MCM3-207ENST00000616552 3208 ntTSL 1 (best) BASIC9.76□□□□□ -0.854e-6■■□□□ 12.7
DDX55Q8NHQ9 MCM3-205ENST00000596288 3169 ntTSL 1 (best) BASIC9.28□□□□□ -0.924e-6■■□□□ 12.7
DDX55Q8NHQ9 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC20.99■□□□□ 0.955e-8■■□□□ 12.6
DDX55Q8NHQ9 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC18.24■□□□□ 0.515e-8■■□□□ 12.6
DDX55Q8NHQ9 PTK7-207ENST00000461389 1035 ntTSL 217.53■□□□□ 0.47e-8■■□□□ 12.6
DDX55Q8NHQ9 PTK7-213ENST00000481273 3436 ntAPPRIS ALT2 TSL 2 BASIC11.36□□□□□ -0.597e-8■■□□□ 12.6
DDX55Q8NHQ9 MICU1-202ENST00000398761 2488 ntAPPRIS ALT1 TSL 5 BASIC14.32□□□□□ -0.122e-12■■□□□ 12.6
DDX55Q8NHQ9 MICU1-211ENST00000635239 2215 ntTSL 5 BASIC13.79□□□□□ -0.22e-12■■□□□ 12.6
DDX55Q8NHQ9 MICU1-212ENST00000642044 2221 ntBASIC13.79□□□□□ -0.22e-12■■□□□ 12.6
DDX55Q8NHQ9 MICU1-201ENST00000361114 2383 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.452e-12■■□□□ 12.6
Retrieved 100 of 15,504 protein–RNA pairs in 172.9 ms