Protein–RNA interactions for Protein: Q8N8U3

RTL3, Retrotransposon Gag-like protein 3, humanhuman

Known RBP Predictions only

Length 475 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3Q8N8U3 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC20.16■□□□□ 0.82
RTL3Q8N8U3 AC098590.1-201ENST00000468126 897 ntBASIC20.16■□□□□ 0.82
RTL3Q8N8U3 KRT18P16-201ENST00000510337 1294 ntBASIC20.16■□□□□ 0.82
RTL3Q8N8U3 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC20.16■□□□□ 0.82
RTL3Q8N8U3 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC20.16■□□□□ 0.82
RTL3Q8N8U3 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
RTL3Q8N8U3 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
RTL3Q8N8U3 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
RTL3Q8N8U3 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC20.16■□□□□ 0.82
RTL3Q8N8U3 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC20.16■□□□□ 0.82
RTL3Q8N8U3 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RTL3Q8N8U3 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC20.16■□□□□ 0.82
RTL3Q8N8U3 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RTL3Q8N8U3 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RTL3Q8N8U3 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
RTL3Q8N8U3 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RTL3Q8N8U3 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC20.15■□□□□ 0.82
RTL3Q8N8U3 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
RTL3Q8N8U3 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC20.15■□□□□ 0.82
RTL3Q8N8U3 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
RTL3Q8N8U3 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RTL3Q8N8U3 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RTL3Q8N8U3 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RTL3Q8N8U3 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC20.15■□□□□ 0.82
RTL3Q8N8U3 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC20.15■□□□□ 0.82
RTL3Q8N8U3 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC20.15■□□□□ 0.82
RTL3Q8N8U3 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC20.15■□□□□ 0.82
RTL3Q8N8U3 AC110285.5-201ENST00000611501 352 ntBASIC20.15■□□□□ 0.82
RTL3Q8N8U3 AL359736.2-201ENST00000621992 437 ntBASIC20.15■□□□□ 0.82
RTL3Q8N8U3 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC20.15■□□□□ 0.82
RTL3Q8N8U3 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC20.15■□□□□ 0.82
RTL3Q8N8U3 TMEM191A-211ENST00000637163 1067 ntBASIC20.15■□□□□ 0.82
RTL3Q8N8U3 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
RTL3Q8N8U3 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC20.15■□□□□ 0.82
RTL3Q8N8U3 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
RTL3Q8N8U3 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RTL3Q8N8U3 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RTL3Q8N8U3 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RTL3Q8N8U3 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RTL3Q8N8U3 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC20.14■□□□□ 0.82
RTL3Q8N8U3 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
RTL3Q8N8U3 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
RTL3Q8N8U3 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.81
RTL3Q8N8U3 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC20.14■□□□□ 0.81
RTL3Q8N8U3 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC20.14■□□□□ 0.81
RTL3Q8N8U3 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.81
RTL3Q8N8U3 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC20.14■□□□□ 0.81
RTL3Q8N8U3 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
RTL3Q8N8U3 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
RTL3Q8N8U3 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
RTL3Q8N8U3 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
RTL3Q8N8U3 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
RTL3Q8N8U3 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
RTL3Q8N8U3 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
RTL3Q8N8U3 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC20.13■□□□□ 0.81
RTL3Q8N8U3 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RTL3Q8N8U3 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC20.13■□□□□ 0.81
RTL3Q8N8U3 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
RTL3Q8N8U3 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RTL3Q8N8U3 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
RTL3Q8N8U3 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
RTL3Q8N8U3 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RTL3Q8N8U3 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
RTL3Q8N8U3 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RTL3Q8N8U3 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC20.13■□□□□ 0.81
RTL3Q8N8U3 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
RTL3Q8N8U3 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
RTL3Q8N8U3 GCSHP5-201ENST00000443090 522 ntBASIC20.13■□□□□ 0.81
RTL3Q8N8U3 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC20.13■□□□□ 0.81
RTL3Q8N8U3 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RTL3Q8N8U3 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC20.13■□□□□ 0.81
RTL3Q8N8U3 RHOD-202ENST00000532559 538 ntTSL 3 BASIC20.13■□□□□ 0.81
RTL3Q8N8U3 AC004264.1-201ENST00000608354 794 ntBASIC20.13■□□□□ 0.81
RTL3Q8N8U3 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC20.13■□□□□ 0.81
RTL3Q8N8U3 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
RTL3Q8N8U3 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RTL3Q8N8U3 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC20.13■□□□□ 0.81
RTL3Q8N8U3 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RTL3Q8N8U3 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
RTL3Q8N8U3 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
RTL3Q8N8U3 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RTL3Q8N8U3 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC20.13■□□□□ 0.81
RTL3Q8N8U3 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RTL3Q8N8U3 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RTL3Q8N8U3 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC20.12■□□□□ 0.81
RTL3Q8N8U3 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
RTL3Q8N8U3 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RTL3Q8N8U3 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RTL3Q8N8U3 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
RTL3Q8N8U3 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
RTL3Q8N8U3 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
RTL3Q8N8U3 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC20.12■□□□□ 0.81
RTL3Q8N8U3 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC20.12■□□□□ 0.81
RTL3Q8N8U3 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.12■□□□□ 0.81
RTL3Q8N8U3 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RTL3Q8N8U3 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC20.12■□□□□ 0.81
RTL3Q8N8U3 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
RTL3Q8N8U3 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC20.12■□□□□ 0.81
RTL3Q8N8U3 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC20.11■□□□□ 0.81
RTL3Q8N8U3 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms