Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC25.96■■□□□ 1.75
USHBP1Q8N6Y0 MFAP1P1-201ENST00000442257 1255 ntBASIC25.96■■□□□ 1.75
USHBP1Q8N6Y0 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC25.96■■□□□ 1.75
USHBP1Q8N6Y0 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
USHBP1Q8N6Y0 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
USHBP1Q8N6Y0 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC25.96■■□□□ 1.75
USHBP1Q8N6Y0 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
USHBP1Q8N6Y0 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
USHBP1Q8N6Y0 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC25.96■■□□□ 1.75
USHBP1Q8N6Y0 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC25.96■■□□□ 1.75
USHBP1Q8N6Y0 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC25.95■■□□□ 1.75
USHBP1Q8N6Y0 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC25.95■■□□□ 1.75
USHBP1Q8N6Y0 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC25.95■■□□□ 1.75
USHBP1Q8N6Y0 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC25.95■■□□□ 1.74
USHBP1Q8N6Y0 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
USHBP1Q8N6Y0 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
USHBP1Q8N6Y0 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC25.95■■□□□ 1.74
USHBP1Q8N6Y0 AC091390.4-202ENST00000476426 537 ntBASIC25.95■■□□□ 1.74
USHBP1Q8N6Y0 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC25.95■■□□□ 1.74
USHBP1Q8N6Y0 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC25.95■■□□□ 1.74
USHBP1Q8N6Y0 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC25.95■■□□□ 1.74
USHBP1Q8N6Y0 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC25.95■■□□□ 1.74
USHBP1Q8N6Y0 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
USHBP1Q8N6Y0 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
USHBP1Q8N6Y0 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
USHBP1Q8N6Y0 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC25.94■■□□□ 1.74
USHBP1Q8N6Y0 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC25.94■■□□□ 1.74
USHBP1Q8N6Y0 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC25.94■■□□□ 1.74
USHBP1Q8N6Y0 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
USHBP1Q8N6Y0 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC25.94■■□□□ 1.74
USHBP1Q8N6Y0 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC25.94■■□□□ 1.74
USHBP1Q8N6Y0 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
USHBP1Q8N6Y0 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC25.94■■□□□ 1.74
USHBP1Q8N6Y0 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
USHBP1Q8N6Y0 Z85996.1-201ENST00000494644 937 ntBASIC25.94■■□□□ 1.74
USHBP1Q8N6Y0 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC25.94■■□□□ 1.74
USHBP1Q8N6Y0 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC25.94■■□□□ 1.74
USHBP1Q8N6Y0 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
USHBP1Q8N6Y0 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
USHBP1Q8N6Y0 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC25.94■■□□□ 1.74
USHBP1Q8N6Y0 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC25.94■■□□□ 1.74
USHBP1Q8N6Y0 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
USHBP1Q8N6Y0 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
USHBP1Q8N6Y0 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
USHBP1Q8N6Y0 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC25.93■■□□□ 1.74
USHBP1Q8N6Y0 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC25.93■■□□□ 1.74
USHBP1Q8N6Y0 PTPA-216ENST00000432651 857 ntTSL 2 BASIC25.93■■□□□ 1.74
USHBP1Q8N6Y0 FAM207BP-201ENST00000447172 505 ntBASIC25.93■■□□□ 1.74
USHBP1Q8N6Y0 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC25.93■■□□□ 1.74
USHBP1Q8N6Y0 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC25.93■■□□□ 1.74
USHBP1Q8N6Y0 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
USHBP1Q8N6Y0 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
USHBP1Q8N6Y0 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
USHBP1Q8N6Y0 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC25.92■■□□□ 1.74
USHBP1Q8N6Y0 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
USHBP1Q8N6Y0 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
USHBP1Q8N6Y0 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC25.92■■□□□ 1.74
USHBP1Q8N6Y0 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC25.92■■□□□ 1.74
USHBP1Q8N6Y0 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
USHBP1Q8N6Y0 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC25.92■■□□□ 1.74
USHBP1Q8N6Y0 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
USHBP1Q8N6Y0 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
USHBP1Q8N6Y0 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC25.92■■□□□ 1.74
USHBP1Q8N6Y0 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
USHBP1Q8N6Y0 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC25.92■■□□□ 1.74
USHBP1Q8N6Y0 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC25.92■■□□□ 1.74
USHBP1Q8N6Y0 CYGB-204ENST00000589342 815 ntTSL 3 BASIC25.92■■□□□ 1.74
USHBP1Q8N6Y0 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC25.92■■□□□ 1.74
USHBP1Q8N6Y0 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC25.92■■□□□ 1.74
USHBP1Q8N6Y0 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC25.92■■□□□ 1.74
USHBP1Q8N6Y0 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC25.91■■□□□ 1.74
USHBP1Q8N6Y0 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
USHBP1Q8N6Y0 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
USHBP1Q8N6Y0 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC25.91■■□□□ 1.74
USHBP1Q8N6Y0 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC25.91■■□□□ 1.74
USHBP1Q8N6Y0 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC25.91■■□□□ 1.74
USHBP1Q8N6Y0 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
USHBP1Q8N6Y0 AC117947.1-201ENST00000427448 529 ntBASIC25.91■■□□□ 1.74
USHBP1Q8N6Y0 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC25.91■■□□□ 1.74
USHBP1Q8N6Y0 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC25.91■■□□□ 1.74
USHBP1Q8N6Y0 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC25.91■■□□□ 1.74
USHBP1Q8N6Y0 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
USHBP1Q8N6Y0 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
USHBP1Q8N6Y0 MOK-225ENST00000522867 1883 ntTSL 5 BASIC25.91■■□□□ 1.74
USHBP1Q8N6Y0 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC25.91■■□□□ 1.74
USHBP1Q8N6Y0 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
USHBP1Q8N6Y0 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC25.91■■□□□ 1.74
USHBP1Q8N6Y0 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC25.9■■□□□ 1.74
USHBP1Q8N6Y0 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC25.9■■□□□ 1.74
USHBP1Q8N6Y0 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC25.9■■□□□ 1.74
USHBP1Q8N6Y0 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC25.9■■□□□ 1.74
USHBP1Q8N6Y0 AK4P3-201ENST00000418260 669 ntBASIC25.9■■□□□ 1.74
USHBP1Q8N6Y0 AC128688.1-201ENST00000487626 519 ntBASIC25.9■■□□□ 1.74
USHBP1Q8N6Y0 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC25.9■■□□□ 1.74
USHBP1Q8N6Y0 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC25.9■■□□□ 1.74
USHBP1Q8N6Y0 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC25.9■■□□□ 1.74
USHBP1Q8N6Y0 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC25.9■■□□□ 1.74
USHBP1Q8N6Y0 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
USHBP1Q8N6Y0 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
USHBP1Q8N6Y0 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms