Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
USF3Q68DE3 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC16.87■□□□□ 0.29
USF3Q68DE3 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
USF3Q68DE3 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
USF3Q68DE3 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
USF3Q68DE3 MMP23A-201ENST00000234610 1017 ntBASIC16.86■□□□□ 0.29
USF3Q68DE3 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
USF3Q68DE3 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC16.86■□□□□ 0.29
USF3Q68DE3 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC16.86■□□□□ 0.29
USF3Q68DE3 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC16.86■□□□□ 0.29
USF3Q68DE3 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
USF3Q68DE3 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC16.86■□□□□ 0.29
USF3Q68DE3 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
USF3Q68DE3 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
USF3Q68DE3 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
USF3Q68DE3 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
USF3Q68DE3 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC16.86■□□□□ 0.29
USF3Q68DE3 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
USF3Q68DE3 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC16.86■□□□□ 0.29
USF3Q68DE3 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC16.86■□□□□ 0.29
USF3Q68DE3 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC16.86■□□□□ 0.29
USF3Q68DE3 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
USF3Q68DE3 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC16.86■□□□□ 0.29
USF3Q68DE3 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
USF3Q68DE3 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC16.86■□□□□ 0.29
USF3Q68DE3 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC16.86■□□□□ 0.29
USF3Q68DE3 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
USF3Q68DE3 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC16.86■□□□□ 0.29
USF3Q68DE3 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC16.86■□□□□ 0.29
USF3Q68DE3 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
USF3Q68DE3 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC16.86■□□□□ 0.29
USF3Q68DE3 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
USF3Q68DE3 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC16.86■□□□□ 0.29
USF3Q68DE3 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
USF3Q68DE3 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
USF3Q68DE3 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
USF3Q68DE3 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
USF3Q68DE3 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
USF3Q68DE3 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
USF3Q68DE3 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
USF3Q68DE3 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
USF3Q68DE3 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC16.85■□□□□ 0.29
USF3Q68DE3 DECR2-212ENST00000627716 352 ntTSL 2 BASIC16.85■□□□□ 0.29
USF3Q68DE3 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
USF3Q68DE3 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
USF3Q68DE3 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
USF3Q68DE3 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
USF3Q68DE3 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
USF3Q68DE3 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
USF3Q68DE3 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC16.85■□□□□ 0.29
USF3Q68DE3 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC16.85■□□□□ 0.29
USF3Q68DE3 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
USF3Q68DE3 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
USF3Q68DE3 KSR1P1-201ENST00000446298 240 ntBASIC16.85■□□□□ 0.29
USF3Q68DE3 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC16.85■□□□□ 0.29
USF3Q68DE3 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
USF3Q68DE3 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
USF3Q68DE3 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC16.85■□□□□ 0.29
USF3Q68DE3 AP000525.1-201ENST00000608286 694 ntBASIC16.85■□□□□ 0.29
USF3Q68DE3 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
USF3Q68DE3 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
USF3Q68DE3 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
USF3Q68DE3 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC16.85■□□□□ 0.29
USF3Q68DE3 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC16.85■□□□□ 0.29
USF3Q68DE3 FP700111.2-201ENST00000619190 1892 ntBASIC16.85■□□□□ 0.29
USF3Q68DE3 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC16.84■□□□□ 0.29
USF3Q68DE3 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC16.84■□□□□ 0.29
USF3Q68DE3 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
USF3Q68DE3 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
USF3Q68DE3 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
USF3Q68DE3 UNC93B2-201ENST00000285383 730 ntBASIC16.84■□□□□ 0.29
USF3Q68DE3 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC16.84■□□□□ 0.29
USF3Q68DE3 NIFKP9-201ENST00000419265 221 ntBASIC16.84■□□□□ 0.29
USF3Q68DE3 RBM42-202ENST00000586618 771 ntTSL 3 BASIC16.84■□□□□ 0.29
USF3Q68DE3 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
USF3Q68DE3 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC16.84■□□□□ 0.29
USF3Q68DE3 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC16.84■□□□□ 0.29
USF3Q68DE3 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC16.84■□□□□ 0.29
USF3Q68DE3 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC16.84■□□□□ 0.29
USF3Q68DE3 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
USF3Q68DE3 LINC01568-207ENST00000641790 1380 ntBASIC16.84■□□□□ 0.29
USF3Q68DE3 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC16.84■□□□□ 0.29
USF3Q68DE3 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC16.84■□□□□ 0.29
USF3Q68DE3 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC16.84■□□□□ 0.29
USF3Q68DE3 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
USF3Q68DE3 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.84■□□□□ 0.29
USF3Q68DE3 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC16.84■□□□□ 0.29
USF3Q68DE3 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.84■□□□□ 0.29
USF3Q68DE3 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
USF3Q68DE3 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.84■□□□□ 0.29
USF3Q68DE3 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC16.84■□□□□ 0.29
USF3Q68DE3 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
USF3Q68DE3 NTF6B-201ENST00000591913 560 ntBASIC16.84■□□□□ 0.29
USF3Q68DE3 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC16.84■□□□□ 0.29
USF3Q68DE3 AC010947.1-201ENST00000623454 693 ntBASIC16.84■□□□□ 0.29
USF3Q68DE3 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC16.84■□□□□ 0.29
USF3Q68DE3 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
USF3Q68DE3 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC16.83■□□□□ 0.29
USF3Q68DE3 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
USF3Q68DE3 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms