Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC19.96■□□□□ 0.79
USP39Q53GS9 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
USP39Q53GS9 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
USP39Q53GS9 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC19.95■□□□□ 0.78
USP39Q53GS9 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
USP39Q53GS9 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
USP39Q53GS9 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
USP39Q53GS9 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
USP39Q53GS9 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
USP39Q53GS9 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC19.95■□□□□ 0.78
USP39Q53GS9 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.95■□□□□ 0.78
USP39Q53GS9 TERF1P1-201ENST00000311003 1181 ntBASIC19.95■□□□□ 0.78
USP39Q53GS9 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC19.95■□□□□ 0.78
USP39Q53GS9 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
USP39Q53GS9 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC19.95■□□□□ 0.78
USP39Q53GS9 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.95■□□□□ 0.78
USP39Q53GS9 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC19.95■□□□□ 0.78
USP39Q53GS9 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.95■□□□□ 0.78
USP39Q53GS9 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC19.95■□□□□ 0.78
USP39Q53GS9 TMA16-209ENST00000513272 803 ntTSL 2 BASIC19.95■□□□□ 0.78
USP39Q53GS9 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC19.95■□□□□ 0.78
USP39Q53GS9 AC010947.1-201ENST00000623454 693 ntBASIC19.95■□□□□ 0.78
USP39Q53GS9 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC19.95■□□□□ 0.78
USP39Q53GS9 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
USP39Q53GS9 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC19.95■□□□□ 0.78
USP39Q53GS9 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
USP39Q53GS9 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
USP39Q53GS9 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
USP39Q53GS9 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
USP39Q53GS9 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC19.95■□□□□ 0.78
USP39Q53GS9 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
USP39Q53GS9 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
USP39Q53GS9 KRT8P20-201ENST00000423953 1409 ntBASIC19.94■□□□□ 0.78
USP39Q53GS9 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC19.94■□□□□ 0.78
USP39Q53GS9 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
USP39Q53GS9 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
USP39Q53GS9 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC19.94■□□□□ 0.78
USP39Q53GS9 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
USP39Q53GS9 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
USP39Q53GS9 AC121338.2-201ENST00000622535 1744 ntBASIC19.94■□□□□ 0.78
USP39Q53GS9 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
USP39Q53GS9 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC19.94■□□□□ 0.78
USP39Q53GS9 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC19.94■□□□□ 0.78
USP39Q53GS9 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC19.94■□□□□ 0.78
USP39Q53GS9 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
USP39Q53GS9 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC19.94■□□□□ 0.78
USP39Q53GS9 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
USP39Q53GS9 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC19.94■□□□□ 0.78
USP39Q53GS9 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC19.94■□□□□ 0.78
USP39Q53GS9 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC19.94■□□□□ 0.78
USP39Q53GS9 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
USP39Q53GS9 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
USP39Q53GS9 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC19.94■□□□□ 0.78
USP39Q53GS9 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC19.94■□□□□ 0.78
USP39Q53GS9 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
USP39Q53GS9 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
USP39Q53GS9 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
USP39Q53GS9 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
USP39Q53GS9 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
USP39Q53GS9 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
USP39Q53GS9 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC19.93■□□□□ 0.78
USP39Q53GS9 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
USP39Q53GS9 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
USP39Q53GS9 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
USP39Q53GS9 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
USP39Q53GS9 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC19.93■□□□□ 0.78
USP39Q53GS9 SLC25A3P1-201ENST00000443844 931 ntBASIC19.93■□□□□ 0.78
USP39Q53GS9 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC19.93■□□□□ 0.78
USP39Q53GS9 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
USP39Q53GS9 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC19.93■□□□□ 0.78
USP39Q53GS9 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC19.93■□□□□ 0.78
USP39Q53GS9 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC19.93■□□□□ 0.78
USP39Q53GS9 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
USP39Q53GS9 GRAMD4P8-201ENST00000605465 1115 ntBASIC19.93■□□□□ 0.78
USP39Q53GS9 CLN6-221ENST00000637494 765 ntTSL 5 BASIC19.93■□□□□ 0.78
USP39Q53GS9 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
USP39Q53GS9 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
USP39Q53GS9 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
USP39Q53GS9 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC19.93■□□□□ 0.78
USP39Q53GS9 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP39Q53GS9 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP39Q53GS9 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP39Q53GS9 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC19.92■□□□□ 0.78
USP39Q53GS9 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP39Q53GS9 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP39Q53GS9 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP39Q53GS9 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP39Q53GS9 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC19.92■□□□□ 0.78
USP39Q53GS9 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC19.92■□□□□ 0.78
USP39Q53GS9 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC19.92■□□□□ 0.78
USP39Q53GS9 AL031985.4-201ENST00000642138 673 ntBASIC19.92■□□□□ 0.78
USP39Q53GS9 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP39Q53GS9 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
USP39Q53GS9 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP39Q53GS9 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP39Q53GS9 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
USP39Q53GS9 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP39Q53GS9 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP39Q53GS9 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP39Q53GS9 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms