Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC20.9■□□□□ 0.94
USP41Q3LFD5 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
USP41Q3LFD5 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
USP41Q3LFD5 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC20.9■□□□□ 0.94
USP41Q3LFD5 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC20.9■□□□□ 0.94
USP41Q3LFD5 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC20.9■□□□□ 0.94
USP41Q3LFD5 AC011506.1-201ENST00000474329 610 ntBASIC20.9■□□□□ 0.94
USP41Q3LFD5 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC20.9■□□□□ 0.94
USP41Q3LFD5 AP005242.2-201ENST00000580065 1175 ntBASIC20.9■□□□□ 0.94
USP41Q3LFD5 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
USP41Q3LFD5 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
USP41Q3LFD5 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
USP41Q3LFD5 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
USP41Q3LFD5 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
USP41Q3LFD5 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC20.89■□□□□ 0.94
USP41Q3LFD5 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
USP41Q3LFD5 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
USP41Q3LFD5 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC20.89■□□□□ 0.93
USP41Q3LFD5 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
USP41Q3LFD5 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
USP41Q3LFD5 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
USP41Q3LFD5 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
USP41Q3LFD5 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
USP41Q3LFD5 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC20.89■□□□□ 0.93
USP41Q3LFD5 TMA16-209ENST00000513272 803 ntTSL 2 BASIC20.89■□□□□ 0.93
USP41Q3LFD5 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC20.89■□□□□ 0.93
USP41Q3LFD5 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC20.89■□□□□ 0.93
USP41Q3LFD5 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC20.89■□□□□ 0.93
USP41Q3LFD5 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
USP41Q3LFD5 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
USP41Q3LFD5 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
USP41Q3LFD5 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
USP41Q3LFD5 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC20.89■□□□□ 0.93
USP41Q3LFD5 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC20.88■□□□□ 0.93
USP41Q3LFD5 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC20.88■□□□□ 0.93
USP41Q3LFD5 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
USP41Q3LFD5 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC20.88■□□□□ 0.93
USP41Q3LFD5 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
USP41Q3LFD5 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC20.88■□□□□ 0.93
USP41Q3LFD5 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
USP41Q3LFD5 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
USP41Q3LFD5 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
USP41Q3LFD5 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
USP41Q3LFD5 AL137013.1-201ENST00000432946 1228 ntBASIC20.88■□□□□ 0.93
USP41Q3LFD5 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC20.88■□□□□ 0.93
USP41Q3LFD5 C2orf69P3-201ENST00000565542 1120 ntBASIC20.88■□□□□ 0.93
USP41Q3LFD5 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC20.88■□□□□ 0.93
USP41Q3LFD5 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
USP41Q3LFD5 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
USP41Q3LFD5 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC20.88■□□□□ 0.93
USP41Q3LFD5 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
USP41Q3LFD5 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
USP41Q3LFD5 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
USP41Q3LFD5 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
USP41Q3LFD5 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
USP41Q3LFD5 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
USP41Q3LFD5 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP41Q3LFD5 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP41Q3LFD5 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC20.87■□□□□ 0.93
USP41Q3LFD5 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC20.87■□□□□ 0.93
USP41Q3LFD5 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC20.87■□□□□ 0.93
USP41Q3LFD5 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP41Q3LFD5 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
USP41Q3LFD5 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP41Q3LFD5 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP41Q3LFD5 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP41Q3LFD5 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
USP41Q3LFD5 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC20.87■□□□□ 0.93
USP41Q3LFD5 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP41Q3LFD5 SLC25A3P1-201ENST00000443844 931 ntBASIC20.87■□□□□ 0.93
USP41Q3LFD5 AC097488.1-201ENST00000507834 756 ntBASIC20.87■□□□□ 0.93
USP41Q3LFD5 AL049597.2-201ENST00000565575 961 ntBASIC20.87■□□□□ 0.93
USP41Q3LFD5 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC20.87■□□□□ 0.93
USP41Q3LFD5 BX119927.1-201ENST00000636596 1552 ntBASIC20.87■□□□□ 0.93
USP41Q3LFD5 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP41Q3LFD5 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP41Q3LFD5 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP41Q3LFD5 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
USP41Q3LFD5 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC20.87■□□□□ 0.93
USP41Q3LFD5 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
USP41Q3LFD5 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC20.87■□□□□ 0.93
USP41Q3LFD5 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC20.87■□□□□ 0.93
USP41Q3LFD5 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP41Q3LFD5 TMEM179-206ENST00000616017 1645 ntBASIC20.86■□□□□ 0.93
USP41Q3LFD5 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC20.86■□□□□ 0.93
USP41Q3LFD5 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
USP41Q3LFD5 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC20.86■□□□□ 0.93
USP41Q3LFD5 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC20.86■□□□□ 0.93
USP41Q3LFD5 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP41Q3LFD5 TERF1P1-201ENST00000311003 1181 ntBASIC20.86■□□□□ 0.93
USP41Q3LFD5 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC20.86■□□□□ 0.93
USP41Q3LFD5 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC20.86■□□□□ 0.93
USP41Q3LFD5 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
USP41Q3LFD5 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
USP41Q3LFD5 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC20.86■□□□□ 0.93
USP41Q3LFD5 AL445228.2-201ENST00000605589 952 ntBASIC20.86■□□□□ 0.93
USP41Q3LFD5 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC20.86■□□□□ 0.93
USP41Q3LFD5 AC130371.2-201ENST00000619443 611 ntBASIC20.86■□□□□ 0.93
USP41Q3LFD5 CLN6-221ENST00000637494 765 ntTSL 5 BASIC20.86■□□□□ 0.93
USP41Q3LFD5 HLA-A-209ENST00000638375 975 ntBASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms