Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
PTCHD3Q3KNS1 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
PTCHD3Q3KNS1 C1QBPP2-201ENST00000528754 825 ntBASIC19.18■□□□□ 0.66
PTCHD3Q3KNS1 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
PTCHD3Q3KNS1 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PTCHD3Q3KNS1 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC19.18■□□□□ 0.66
PTCHD3Q3KNS1 KLF2-202ENST00000592003 564 ntTSL 3 BASIC19.18■□□□□ 0.66
PTCHD3Q3KNS1 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC19.18■□□□□ 0.66
PTCHD3Q3KNS1 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC19.18■□□□□ 0.66
PTCHD3Q3KNS1 AC069544.1-201ENST00000609399 999 ntBASIC19.18■□□□□ 0.66
PTCHD3Q3KNS1 AL359736.2-201ENST00000621992 437 ntBASIC19.18■□□□□ 0.66
PTCHD3Q3KNS1 AP006294.2-201ENST00000641667 209 ntBASIC19.18■□□□□ 0.66
PTCHD3Q3KNS1 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PTCHD3Q3KNS1 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PTCHD3Q3KNS1 TREX1-205ENST00000625293 1783 ntBASIC19.18■□□□□ 0.66
PTCHD3Q3KNS1 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PTCHD3Q3KNS1 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PTCHD3Q3KNS1 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PTCHD3Q3KNS1 AC116351.2-201ENST00000606540 1585 ntBASIC19.18■□□□□ 0.66
PTCHD3Q3KNS1 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
PTCHD3Q3KNS1 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PTCHD3Q3KNS1 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
PTCHD3Q3KNS1 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PTCHD3Q3KNS1 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PTCHD3Q3KNS1 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC19.18■□□□□ 0.66
PTCHD3Q3KNS1 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTCHD3Q3KNS1 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PTCHD3Q3KNS1 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
PTCHD3Q3KNS1 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC19.17■□□□□ 0.66
PTCHD3Q3KNS1 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTCHD3Q3KNS1 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC19.17■□□□□ 0.66
PTCHD3Q3KNS1 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC19.17■□□□□ 0.66
PTCHD3Q3KNS1 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PTCHD3Q3KNS1 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTCHD3Q3KNS1 BAALC-201ENST00000297574 801 ntTSL 3 BASIC19.17■□□□□ 0.66
PTCHD3Q3KNS1 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PTCHD3Q3KNS1 CALM3-202ENST00000391918 702 ntTSL 2 BASIC19.17■□□□□ 0.66
PTCHD3Q3KNS1 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
PTCHD3Q3KNS1 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC19.17■□□□□ 0.66
PTCHD3Q3KNS1 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC19.17■□□□□ 0.66
PTCHD3Q3KNS1 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PTCHD3Q3KNS1 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTCHD3Q3KNS1 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTCHD3Q3KNS1 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTCHD3Q3KNS1 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTCHD3Q3KNS1 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTCHD3Q3KNS1 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
PTCHD3Q3KNS1 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTCHD3Q3KNS1 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
PTCHD3Q3KNS1 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
PTCHD3Q3KNS1 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTCHD3Q3KNS1 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PTCHD3Q3KNS1 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
PTCHD3Q3KNS1 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC19.16■□□□□ 0.66
PTCHD3Q3KNS1 AC124283.5-201ENST00000624661 1809 ntBASIC19.16■□□□□ 0.66
PTCHD3Q3KNS1 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC19.16■□□□□ 0.66
PTCHD3Q3KNS1 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PTCHD3Q3KNS1 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC19.16■□□□□ 0.66
PTCHD3Q3KNS1 PWWP2AP1-201ENST00000429776 2273 ntBASIC19.16■□□□□ 0.66
PTCHD3Q3KNS1 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC19.16■□□□□ 0.66
PTCHD3Q3KNS1 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC19.16■□□□□ 0.66
PTCHD3Q3KNS1 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC19.16■□□□□ 0.66
PTCHD3Q3KNS1 POM121L13P-201ENST00000422362 380 ntBASIC19.16■□□□□ 0.66
PTCHD3Q3KNS1 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC19.16■□□□□ 0.66
PTCHD3Q3KNS1 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC19.16■□□□□ 0.66
PTCHD3Q3KNS1 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PTCHD3Q3KNS1 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PTCHD3Q3KNS1 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PTCHD3Q3KNS1 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
PTCHD3Q3KNS1 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
PTCHD3Q3KNS1 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PTCHD3Q3KNS1 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC19.16■□□□□ 0.66
PTCHD3Q3KNS1 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
PTCHD3Q3KNS1 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
PTCHD3Q3KNS1 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PTCHD3Q3KNS1 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC19.15■□□□□ 0.66
PTCHD3Q3KNS1 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PTCHD3Q3KNS1 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
PTCHD3Q3KNS1 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PTCHD3Q3KNS1 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC19.15■□□□□ 0.66
PTCHD3Q3KNS1 RPPH1-201ENST00000516869 333 ntBASIC19.15■□□□□ 0.66
PTCHD3Q3KNS1 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC19.15■□□□□ 0.66
PTCHD3Q3KNS1 RHOD-202ENST00000532559 538 ntTSL 3 BASIC19.15■□□□□ 0.66
PTCHD3Q3KNS1 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC19.15■□□□□ 0.66
PTCHD3Q3KNS1 FAM197Y4-202ENST00000622692 608 ntBASIC19.15■□□□□ 0.66
PTCHD3Q3KNS1 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PTCHD3Q3KNS1 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC19.15■□□□□ 0.66
PTCHD3Q3KNS1 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PTCHD3Q3KNS1 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
PTCHD3Q3KNS1 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC19.14■□□□□ 0.65
PTCHD3Q3KNS1 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PTCHD3Q3KNS1 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.14■□□□□ 0.65
PTCHD3Q3KNS1 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PTCHD3Q3KNS1 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
PTCHD3Q3KNS1 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
PTCHD3Q3KNS1 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.65
PTCHD3Q3KNS1 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PTCHD3Q3KNS1 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC19.14■□□□□ 0.65
PTCHD3Q3KNS1 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
PTCHD3Q3KNS1 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms