Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ABCA4P78363 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ABCA4P78363 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ABCA4P78363 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC16.9■□□□□ 0.3
ABCA4P78363 FDX2-206ENST00000492239 773 ntTSL 2 BASIC16.9■□□□□ 0.3
ABCA4P78363 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
ABCA4P78363 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC16.9■□□□□ 0.3
ABCA4P78363 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ABCA4P78363 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
ABCA4P78363 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
ABCA4P78363 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
ABCA4P78363 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
ABCA4P78363 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ABCA4P78363 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ABCA4P78363 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
ABCA4P78363 CRYGFP-201ENST00000418459 633 ntBASIC16.9■□□□□ 0.3
ABCA4P78363 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC16.9■□□□□ 0.3
ABCA4P78363 AC007663.1-201ENST00000438948 1240 ntBASIC16.9■□□□□ 0.3
ABCA4P78363 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
ABCA4P78363 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
ABCA4P78363 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ABCA4P78363 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC16.9■□□□□ 0.3
ABCA4P78363 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
ABCA4P78363 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC16.9■□□□□ 0.3
ABCA4P78363 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
ABCA4P78363 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
ABCA4P78363 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ABCA4P78363 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ABCA4P78363 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
ABCA4P78363 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC16.89■□□□□ 0.29
ABCA4P78363 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
ABCA4P78363 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
ABCA4P78363 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
ABCA4P78363 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC16.89■□□□□ 0.29
ABCA4P78363 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC16.89■□□□□ 0.29
ABCA4P78363 TSPY14P-201ENST00000303979 915 ntBASIC16.89■□□□□ 0.29
ABCA4P78363 HMGA1P5-201ENST00000412453 271 ntBASIC16.89■□□□□ 0.29
ABCA4P78363 LIN28AP1-201ENST00000429574 405 ntBASIC16.89■□□□□ 0.29
ABCA4P78363 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC16.89■□□□□ 0.29
ABCA4P78363 AC063952.2-201ENST00000498792 1227 ntBASIC16.89■□□□□ 0.29
ABCA4P78363 GRAMD4P8-201ENST00000605465 1115 ntBASIC16.89■□□□□ 0.29
ABCA4P78363 FAM87A-204ENST00000613235 858 ntBASIC16.89■□□□□ 0.29
ABCA4P78363 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
ABCA4P78363 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ABCA4P78363 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ABCA4P78363 ATP5G1P1-201ENST00000448724 379 ntBASIC16.89■□□□□ 0.29
ABCA4P78363 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC16.89■□□□□ 0.29
ABCA4P78363 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC16.89■□□□□ 0.29
ABCA4P78363 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
ABCA4P78363 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC16.89■□□□□ 0.29
ABCA4P78363 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC16.89■□□□□ 0.29
ABCA4P78363 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
ABCA4P78363 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ABCA4P78363 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
ABCA4P78363 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
ABCA4P78363 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC16.88■□□□□ 0.29
ABCA4P78363 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC16.88■□□□□ 0.29
ABCA4P78363 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC16.88■□□□□ 0.29
ABCA4P78363 AC022616.7-201ENST00000525383 220 ntBASIC16.88■□□□□ 0.29
ABCA4P78363 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC16.88■□□□□ 0.29
ABCA4P78363 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC16.88■□□□□ 0.29
ABCA4P78363 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ABCA4P78363 AC096733.2-201ENST00000609937 1394 ntBASIC16.88■□□□□ 0.29
ABCA4P78363 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC16.88■□□□□ 0.29
ABCA4P78363 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC16.88■□□□□ 0.29
ABCA4P78363 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
ABCA4P78363 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ABCA4P78363 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
ABCA4P78363 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC16.88■□□□□ 0.29
ABCA4P78363 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
ABCA4P78363 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ABCA4P78363 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC16.87■□□□□ 0.29
ABCA4P78363 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ABCA4P78363 CALM3-202ENST00000391918 702 ntTSL 2 BASIC16.87■□□□□ 0.29
ABCA4P78363 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC16.87■□□□□ 0.29
ABCA4P78363 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC16.87■□□□□ 0.29
ABCA4P78363 YBX1P2-201ENST00000489612 999 ntBASIC16.87■□□□□ 0.29
ABCA4P78363 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
ABCA4P78363 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC16.87■□□□□ 0.29
ABCA4P78363 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
ABCA4P78363 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
ABCA4P78363 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
ABCA4P78363 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC16.87■□□□□ 0.29
ABCA4P78363 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
ABCA4P78363 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
ABCA4P78363 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
ABCA4P78363 ANKRD20A18P-201ENST00000359341 492 ntBASIC16.87■□□□□ 0.29
ABCA4P78363 GUK1-204ENST00000366721 689 ntTSL 3 BASIC16.87■□□□□ 0.29
ABCA4P78363 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC16.87■□□□□ 0.29
ABCA4P78363 AP000692.2-201ENST00000608391 879 ntBASIC16.87■□□□□ 0.29
ABCA4P78363 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC16.87■□□□□ 0.29
ABCA4P78363 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC16.87■□□□□ 0.29
ABCA4P78363 RCC2P6-201ENST00000526625 1557 ntBASIC16.87■□□□□ 0.29
ABCA4P78363 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ABCA4P78363 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ABCA4P78363 AC007225.1-201ENST00000566331 1836 ntBASIC16.87■□□□□ 0.29
ABCA4P78363 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC16.87■□□□□ 0.29
ABCA4P78363 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ABCA4P78363 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
ABCA4P78363 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms