Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 ERF-202ENST00000440177 2032 ntTSL 2 BASIC20.54■□□□□ 0.88
LIG3P49916 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LIG3P49916 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LIG3P49916 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
LIG3P49916 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LIG3P49916 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
LIG3P49916 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
LIG3P49916 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LIG3P49916 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LIG3P49916 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LIG3P49916 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC20.53■□□□□ 0.88
LIG3P49916 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
LIG3P49916 KRT18P68-201ENST00000392293 1000 ntBASIC20.53■□□□□ 0.88
LIG3P49916 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
LIG3P49916 DUSP5P2-201ENST00000426873 1033 ntBASIC20.53■□□□□ 0.88
LIG3P49916 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC20.53■□□□□ 0.88
LIG3P49916 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC20.53■□□□□ 0.88
LIG3P49916 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC20.53■□□□□ 0.88
LIG3P49916 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
LIG3P49916 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC20.53■□□□□ 0.88
LIG3P49916 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC20.53■□□□□ 0.88
LIG3P49916 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC20.53■□□□□ 0.88
LIG3P49916 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC20.53■□□□□ 0.88
LIG3P49916 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
LIG3P49916 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
LIG3P49916 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
LIG3P49916 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LIG3P49916 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LIG3P49916 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LIG3P49916 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LIG3P49916 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC20.52■□□□□ 0.88
LIG3P49916 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC20.52■□□□□ 0.88
LIG3P49916 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
LIG3P49916 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
LIG3P49916 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC20.52■□□□□ 0.88
LIG3P49916 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LIG3P49916 GCK-205ENST00000437084 1385 ntTSL 5 BASIC20.52■□□□□ 0.88
LIG3P49916 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LIG3P49916 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LIG3P49916 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LIG3P49916 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC20.52■□□□□ 0.88
LIG3P49916 OR2A1-AS1-201ENST00000462305 773 ntBASIC20.52■□□□□ 0.88
LIG3P49916 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC20.52■□□□□ 0.88
LIG3P49916 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC20.52■□□□□ 0.88
LIG3P49916 BET1L-207ENST00000529614 560 ntTSL 5 BASIC20.52■□□□□ 0.88
LIG3P49916 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC20.52■□□□□ 0.88
LIG3P49916 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
LIG3P49916 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LIG3P49916 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC20.52■□□□□ 0.87
LIG3P49916 AC011484.1-201ENST00000377652 1995 ntBASIC20.52■□□□□ 0.87
LIG3P49916 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
LIG3P49916 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
LIG3P49916 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC20.52■□□□□ 0.87
LIG3P49916 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
LIG3P49916 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
LIG3P49916 AC020763.4-201ENST00000623414 4170 ntBASIC20.51■□□□□ 0.87
LIG3P49916 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
LIG3P49916 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LIG3P49916 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC20.51■□□□□ 0.87
LIG3P49916 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LIG3P49916 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
LIG3P49916 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
LIG3P49916 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC20.51■□□□□ 0.87
LIG3P49916 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LIG3P49916 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LIG3P49916 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LIG3P49916 SERPINH1P1-201ENST00000419794 1249 ntBASIC20.51■□□□□ 0.87
LIG3P49916 RHEB-204ENST00000472642 900 ntTSL 3 BASIC20.51■□□□□ 0.87
LIG3P49916 AC097658.1-201ENST00000475555 843 ntBASIC20.51■□□□□ 0.87
LIG3P49916 AC091874.3-201ENST00000512672 1195 ntBASIC20.51■□□□□ 0.87
LIG3P49916 AL589743.5-201ENST00000616611 1050 ntBASIC20.51■□□□□ 0.87
LIG3P49916 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC20.51■□□□□ 0.87
LIG3P49916 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC20.51■□□□□ 0.87
LIG3P49916 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
LIG3P49916 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LIG3P49916 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
LIG3P49916 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LIG3P49916 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC20.51■□□□□ 0.87
LIG3P49916 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC20.51■□□□□ 0.87
LIG3P49916 AC138932.1-201ENST00000534164 6830 ntBASIC20.51■□□□□ 0.87
LIG3P49916 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LIG3P49916 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC20.51■□□□□ 0.87
LIG3P49916 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LIG3P49916 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LIG3P49916 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC20.5■□□□□ 0.87
LIG3P49916 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC20.5■□□□□ 0.87
LIG3P49916 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
LIG3P49916 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
LIG3P49916 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
LIG3P49916 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
LIG3P49916 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
LIG3P49916 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC20.5■□□□□ 0.87
LIG3P49916 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC20.5■□□□□ 0.87
LIG3P49916 CD99P1-205ENST00000527459 561 ntBASIC20.5■□□□□ 0.87
LIG3P49916 MYC-209ENST00000641252 345 ntBASIC20.5■□□□□ 0.87
LIG3P49916 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
LIG3P49916 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
LIG3P49916 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LIG3P49916 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC20.5■□□□□ 0.87
LIG3P49916 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms