Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
PTPN4P29074 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PTPN4P29074 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC19.66■□□□□ 0.74
PTPN4P29074 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PTPN4P29074 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC19.66■□□□□ 0.74
PTPN4P29074 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
PTPN4P29074 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PTPN4P29074 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PTPN4P29074 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
PTPN4P29074 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC19.66■□□□□ 0.74
PTPN4P29074 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC19.66■□□□□ 0.74
PTPN4P29074 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PTPN4P29074 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
PTPN4P29074 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
PTPN4P29074 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PTPN4P29074 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
PTPN4P29074 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PTPN4P29074 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
PTPN4P29074 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
PTPN4P29074 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC19.65■□□□□ 0.74
PTPN4P29074 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PTPN4P29074 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
PTPN4P29074 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
PTPN4P29074 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
PTPN4P29074 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
PTPN4P29074 RHEB-204ENST00000472642 900 ntTSL 3 BASIC19.65■□□□□ 0.74
PTPN4P29074 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC19.65■□□□□ 0.74
PTPN4P29074 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PTPN4P29074 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC19.65■□□□□ 0.74
PTPN4P29074 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
PTPN4P29074 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PTPN4P29074 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC19.65■□□□□ 0.74
PTPN4P29074 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PTPN4P29074 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
PTPN4P29074 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
PTPN4P29074 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
PTPN4P29074 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PTPN4P29074 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PTPN4P29074 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
PTPN4P29074 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC19.64■□□□□ 0.73
PTPN4P29074 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC19.64■□□□□ 0.73
PTPN4P29074 AC083880.1-201ENST00000608266 535 ntBASIC19.64■□□□□ 0.73
PTPN4P29074 MYC-209ENST00000641252 345 ntBASIC19.64■□□□□ 0.73
PTPN4P29074 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC19.64■□□□□ 0.73
PTPN4P29074 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PTPN4P29074 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC19.64■□□□□ 0.73
PTPN4P29074 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC19.64■□□□□ 0.73
PTPN4P29074 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PTPN4P29074 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC19.64■□□□□ 0.73
PTPN4P29074 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PTPN4P29074 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC19.64■□□□□ 0.73
PTPN4P29074 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
PTPN4P29074 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PTPN4P29074 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC19.64■□□□□ 0.73
PTPN4P29074 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC19.64■□□□□ 0.73
PTPN4P29074 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PTPN4P29074 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC19.63■□□□□ 0.73
PTPN4P29074 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PTPN4P29074 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PTPN4P29074 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
PTPN4P29074 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC19.63■□□□□ 0.73
PTPN4P29074 ADK-206ENST00000541550 2222 ntTSL 2 BASIC19.63■□□□□ 0.73
PTPN4P29074 PTGES2-AS1-201ENST00000443493 2100 ntBASIC19.63■□□□□ 0.73
PTPN4P29074 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC19.63■□□□□ 0.73
PTPN4P29074 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
PTPN4P29074 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC19.63■□□□□ 0.73
PTPN4P29074 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PTPN4P29074 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
PTPN4P29074 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC19.63■□□□□ 0.73
PTPN4P29074 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC19.63■□□□□ 0.73
PTPN4P29074 ITM2C-210ENST00000620962 501 ntBASIC19.63■□□□□ 0.73
PTPN4P29074 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
PTPN4P29074 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
PTPN4P29074 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PTPN4P29074 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
PTPN4P29074 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
PTPN4P29074 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
PTPN4P29074 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
PTPN4P29074 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC19.62■□□□□ 0.73
PTPN4P29074 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC19.62■□□□□ 0.73
PTPN4P29074 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC19.62■□□□□ 0.73
PTPN4P29074 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC19.62■□□□□ 0.73
PTPN4P29074 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC19.62■□□□□ 0.73
PTPN4P29074 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
PTPN4P29074 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
PTPN4P29074 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
PTPN4P29074 KRT18P29-201ENST00000397031 1267 ntBASIC19.62■□□□□ 0.73
PTPN4P29074 AC091874.3-201ENST00000512672 1195 ntBASIC19.62■□□□□ 0.73
PTPN4P29074 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC19.62■□□□□ 0.73
PTPN4P29074 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
PTPN4P29074 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
PTPN4P29074 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC19.62■□□□□ 0.73
PTPN4P29074 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
PTPN4P29074 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
PTPN4P29074 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
PTPN4P29074 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
PTPN4P29074 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
PTPN4P29074 AL691432.2-201ENST00000607222 2038 ntBASIC19.61■□□□□ 0.73
PTPN4P29074 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PTPN4P29074 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms