Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
BDNFP23560 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
BDNFP23560 DHDH-203ENST00000522614 776 ntTSL 5 BASIC20.73■□□□□ 0.91
BDNFP23560 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC20.73■□□□□ 0.91
BDNFP23560 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC20.73■□□□□ 0.91
BDNFP23560 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
BDNFP23560 MIR4785-201ENST00000585005 73 ntBASIC20.73■□□□□ 0.91
BDNFP23560 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC20.73■□□□□ 0.91
BDNFP23560 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC20.73■□□□□ 0.91
BDNFP23560 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC20.73■□□□□ 0.91
BDNFP23560 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
BDNFP23560 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
BDNFP23560 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
BDNFP23560 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
BDNFP23560 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
BDNFP23560 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
BDNFP23560 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC20.73■□□□□ 0.91
BDNFP23560 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
BDNFP23560 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
BDNFP23560 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC20.72■□□□□ 0.91
BDNFP23560 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
BDNFP23560 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC20.72■□□□□ 0.91
BDNFP23560 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
BDNFP23560 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
BDNFP23560 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC20.72■□□□□ 0.91
BDNFP23560 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
BDNFP23560 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC20.72■□□□□ 0.91
BDNFP23560 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
BDNFP23560 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC20.72■□□□□ 0.91
BDNFP23560 NIFKP9-201ENST00000419265 221 ntBASIC20.72■□□□□ 0.91
BDNFP23560 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
BDNFP23560 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
BDNFP23560 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC20.72■□□□□ 0.91
BDNFP23560 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC20.72■□□□□ 0.91
BDNFP23560 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC20.72■□□□□ 0.91
BDNFP23560 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC20.72■□□□□ 0.91
BDNFP23560 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
BDNFP23560 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
BDNFP23560 LINC01521-201ENST00000504184 1943 ntBASIC20.72■□□□□ 0.91
BDNFP23560 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC20.72■□□□□ 0.91
BDNFP23560 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC20.72■□□□□ 0.91
BDNFP23560 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC20.72■□□□□ 0.91
BDNFP23560 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.72■□□□□ 0.91
BDNFP23560 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
BDNFP23560 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
BDNFP23560 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
BDNFP23560 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
BDNFP23560 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
BDNFP23560 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
BDNFP23560 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
BDNFP23560 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
BDNFP23560 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
BDNFP23560 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC20.71■□□□□ 0.91
BDNFP23560 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
BDNFP23560 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
BDNFP23560 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC20.71■□□□□ 0.91
BDNFP23560 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC20.71■□□□□ 0.91
BDNFP23560 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC20.71■□□□□ 0.91
BDNFP23560 AC026471.5-201ENST00000615068 467 ntBASIC20.71■□□□□ 0.91
BDNFP23560 CR392000.1-201ENST00000624770 1228 ntBASIC20.71■□□□□ 0.91
BDNFP23560 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC20.71■□□□□ 0.91
BDNFP23560 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
BDNFP23560 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
BDNFP23560 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
BDNFP23560 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
BDNFP23560 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
BDNFP23560 SRI-203ENST00000419179 1307 ntTSL 2 BASIC20.71■□□□□ 0.91
BDNFP23560 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
BDNFP23560 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC20.7■□□□□ 0.91
BDNFP23560 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
BDNFP23560 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
BDNFP23560 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
BDNFP23560 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC20.7■□□□□ 0.9
BDNFP23560 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
BDNFP23560 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
BDNFP23560 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
BDNFP23560 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
BDNFP23560 KSR1P1-201ENST00000446298 240 ntBASIC20.7■□□□□ 0.9
BDNFP23560 TSPY15P-201ENST00000457163 923 ntBASIC20.7■□□□□ 0.9
BDNFP23560 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
BDNFP23560 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
BDNFP23560 AC009237.14-201ENST00000609975 1594 ntBASIC20.7■□□□□ 0.9
BDNFP23560 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC20.7■□□□□ 0.9
BDNFP23560 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
BDNFP23560 TCF3P1-201ENST00000423021 1937 ntBASIC20.7■□□□□ 0.9
BDNFP23560 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC20.7■□□□□ 0.9
BDNFP23560 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
BDNFP23560 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC20.7■□□□□ 0.9
BDNFP23560 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC20.7■□□□□ 0.9
BDNFP23560 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
BDNFP23560 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
BDNFP23560 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
BDNFP23560 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC20.69■□□□□ 0.9
BDNFP23560 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
BDNFP23560 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.69■□□□□ 0.9
BDNFP23560 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC20.69■□□□□ 0.9
BDNFP23560 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
BDNFP23560 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
BDNFP23560 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC20.69■□□□□ 0.9
BDNFP23560 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC20.69■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms