Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC18.7■□□□□ 0.58
SDC1P18827 AC092118.2-201ENST00000613495 667 ntBASIC18.7■□□□□ 0.58
SDC1P18827 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
SDC1P18827 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
SDC1P18827 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SDC1P18827 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC18.7■□□□□ 0.58
SDC1P18827 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SDC1P18827 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC18.7■□□□□ 0.58
SDC1P18827 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SDC1P18827 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SDC1P18827 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC18.69■□□□□ 0.58
SDC1P18827 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SDC1P18827 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SDC1P18827 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SDC1P18827 TNXA-203ENST00000507684 2038 ntBASIC18.69■□□□□ 0.58
SDC1P18827 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SDC1P18827 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
SDC1P18827 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SDC1P18827 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SDC1P18827 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SDC1P18827 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
SDC1P18827 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SDC1P18827 GUSBP6-202ENST00000438529 1198 ntBASIC18.69■□□□□ 0.58
SDC1P18827 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC18.69■□□□□ 0.58
SDC1P18827 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC18.69■□□□□ 0.58
SDC1P18827 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SDC1P18827 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SDC1P18827 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC18.69■□□□□ 0.58
SDC1P18827 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
SDC1P18827 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
SDC1P18827 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
SDC1P18827 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC18.69■□□□□ 0.58
SDC1P18827 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SDC1P18827 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SDC1P18827 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SDC1P18827 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
SDC1P18827 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC18.68■□□□□ 0.58
SDC1P18827 AL020996.1-203ENST00000536896 2307 ntBASIC18.68■□□□□ 0.58
SDC1P18827 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SDC1P18827 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SDC1P18827 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SDC1P18827 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC18.68■□□□□ 0.58
SDC1P18827 GGT1-206ENST00000404223 952 ntTSL 2 BASIC18.68■□□□□ 0.58
SDC1P18827 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC18.68■□□□□ 0.58
SDC1P18827 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC18.68■□□□□ 0.58
SDC1P18827 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC18.68■□□□□ 0.58
SDC1P18827 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC18.68■□□□□ 0.58
SDC1P18827 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SDC1P18827 AC091874.3-201ENST00000512672 1195 ntBASIC18.68■□□□□ 0.58
SDC1P18827 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC18.68■□□□□ 0.58
SDC1P18827 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
SDC1P18827 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SDC1P18827 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC18.68■□□□□ 0.58
SDC1P18827 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SDC1P18827 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
SDC1P18827 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
SDC1P18827 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SDC1P18827 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
SDC1P18827 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SDC1P18827 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
SDC1P18827 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC18.68■□□□□ 0.58
SDC1P18827 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SDC1P18827 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC18.68■□□□□ 0.58
SDC1P18827 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SDC1P18827 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
SDC1P18827 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC18.68■□□□□ 0.58
SDC1P18827 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
SDC1P18827 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SDC1P18827 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
SDC1P18827 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SDC1P18827 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SDC1P18827 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
SDC1P18827 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC18.67■□□□□ 0.58
SDC1P18827 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
SDC1P18827 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SDC1P18827 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SDC1P18827 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC18.67■□□□□ 0.58
SDC1P18827 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC18.67■□□□□ 0.58
SDC1P18827 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
SDC1P18827 RER1-204ENST00000378518 522 ntTSL 3 BASIC18.67■□□□□ 0.58
SDC1P18827 PPP1R14BP3-201ENST00000509033 445 ntBASIC18.67■□□□□ 0.58
SDC1P18827 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC18.67■□□□□ 0.58
SDC1P18827 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC18.67■□□□□ 0.58
SDC1P18827 WT1-AS_3.1-201ENST00000613262 234 ntBASIC18.67■□□□□ 0.58
SDC1P18827 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC18.67■□□□□ 0.58
SDC1P18827 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SDC1P18827 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC18.67■□□□□ 0.58
SDC1P18827 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SDC1P18827 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SDC1P18827 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SDC1P18827 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SDC1P18827 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SDC1P18827 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SDC1P18827 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SDC1P18827 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SDC1P18827 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SDC1P18827 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
SDC1P18827 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SDC1P18827 AC124283.5-201ENST00000624661 1809 ntBASIC18.66■□□□□ 0.58
SDC1P18827 TSPY6P-201ENST00000448518 926 ntBASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms