Protein–RNA interactions for Protein: P0CW20

LIMS4, LIM and senescent cell antigen-like-containing domain protein 4, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4P0CW20 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIMS4P0CW20 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIMS4P0CW20 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LIMS4P0CW20 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
LIMS4P0CW20 JTB-203ENST00000368589 1216 ntTSL 2 BASIC17.45■□□□□ 0.38
LIMS4P0CW20 TERF1P5-201ENST00000477545 1207 ntBASIC17.45■□□□□ 0.38
LIMS4P0CW20 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC17.45■□□□□ 0.38
LIMS4P0CW20 KRT18P61-201ENST00000585825 1298 ntBASIC17.45■□□□□ 0.38
LIMS4P0CW20 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LIMS4P0CW20 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC17.45■□□□□ 0.38
LIMS4P0CW20 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC17.45■□□□□ 0.38
LIMS4P0CW20 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
LIMS4P0CW20 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC17.45■□□□□ 0.38
LIMS4P0CW20 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC17.45■□□□□ 0.38
LIMS4P0CW20 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC17.45■□□□□ 0.38
LIMS4P0CW20 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIMS4P0CW20 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIMS4P0CW20 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
LIMS4P0CW20 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIMS4P0CW20 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LIMS4P0CW20 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC17.45■□□□□ 0.38
LIMS4P0CW20 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIMS4P0CW20 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIMS4P0CW20 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIMS4P0CW20 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIMS4P0CW20 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIMS4P0CW20 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIMS4P0CW20 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
LIMS4P0CW20 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
LIMS4P0CW20 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC17.44■□□□□ 0.38
LIMS4P0CW20 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LIMS4P0CW20 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIMS4P0CW20 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
LIMS4P0CW20 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
LIMS4P0CW20 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIMS4P0CW20 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIMS4P0CW20 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC17.44■□□□□ 0.38
LIMS4P0CW20 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIMS4P0CW20 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
LIMS4P0CW20 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
LIMS4P0CW20 KRT19P1-201ENST00000405746 1186 ntBASIC17.44■□□□□ 0.38
LIMS4P0CW20 YBX1P1-201ENST00000445822 960 ntBASIC17.44■□□□□ 0.38
LIMS4P0CW20 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC17.44■□□□□ 0.38
LIMS4P0CW20 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC17.44■□□□□ 0.38
LIMS4P0CW20 AL162412.1-201ENST00000567129 965 ntBASIC17.44■□□□□ 0.38
LIMS4P0CW20 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC17.44■□□□□ 0.38
LIMS4P0CW20 AL139246.5-201ENST00000606645 996 ntBASIC17.44■□□□□ 0.38
LIMS4P0CW20 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC17.44■□□□□ 0.38
LIMS4P0CW20 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIMS4P0CW20 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIMS4P0CW20 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LIMS4P0CW20 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIMS4P0CW20 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIMS4P0CW20 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIMS4P0CW20 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LIMS4P0CW20 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIMS4P0CW20 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
LIMS4P0CW20 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIMS4P0CW20 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LIMS4P0CW20 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIMS4P0CW20 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
LIMS4P0CW20 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
LIMS4P0CW20 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIMS4P0CW20 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIMS4P0CW20 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC17.43■□□□□ 0.38
LIMS4P0CW20 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC17.43■□□□□ 0.38
LIMS4P0CW20 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIMS4P0CW20 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIMS4P0CW20 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
LIMS4P0CW20 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIMS4P0CW20 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LIMS4P0CW20 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIMS4P0CW20 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
LIMS4P0CW20 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIMS4P0CW20 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC17.42■□□□□ 0.38
LIMS4P0CW20 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIMS4P0CW20 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
LIMS4P0CW20 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC17.42■□□□□ 0.38
LIMS4P0CW20 PARP1-202ENST00000366792 553 ntTSL 3 BASIC17.42■□□□□ 0.38
LIMS4P0CW20 HLA-G-202ENST00000376815 851 ntBASIC17.42■□□□□ 0.38
LIMS4P0CW20 HLA-G-203ENST00000376818 1127 ntBASIC17.42■□□□□ 0.38
LIMS4P0CW20 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
LIMS4P0CW20 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC17.42■□□□□ 0.38
LIMS4P0CW20 PBX1-209ENST00000485769 834 ntTSL 2 BASIC17.42■□□□□ 0.38
LIMS4P0CW20 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
LIMS4P0CW20 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC17.42■□□□□ 0.38
LIMS4P0CW20 RAB43-208ENST00000615093 783 ntTSL 5 BASIC17.42■□□□□ 0.38
LIMS4P0CW20 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIMS4P0CW20 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIMS4P0CW20 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIMS4P0CW20 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC17.42■□□□□ 0.38
LIMS4P0CW20 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIMS4P0CW20 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC17.42■□□□□ 0.38
LIMS4P0CW20 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIMS4P0CW20 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIMS4P0CW20 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
LIMS4P0CW20 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIMS4P0CW20 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIMS4P0CW20 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIMS4P0CW20 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms