Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 YBX1P10-201ENST00000444752 975 ntBASIC23.18■■□□□ 1.3
HMGB1P09429 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC23.18■■□□□ 1.3
HMGB1P09429 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC23.18■■□□□ 1.3
HMGB1P09429 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC23.18■■□□□ 1.3
HMGB1P09429 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
HMGB1P09429 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC23.18■■□□□ 1.3
HMGB1P09429 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
HMGB1P09429 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
HMGB1P09429 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC23.17■■□□□ 1.3
HMGB1P09429 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
HMGB1P09429 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
HMGB1P09429 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
HMGB1P09429 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC23.17■■□□□ 1.3
HMGB1P09429 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
HMGB1P09429 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
HMGB1P09429 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC23.17■■□□□ 1.3
HMGB1P09429 PNN-205ENST00000556530 601 ntTSL 2 BASIC23.17■■□□□ 1.3
HMGB1P09429 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
HMGB1P09429 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC23.17■■□□□ 1.3
HMGB1P09429 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC23.17■■□□□ 1.3
HMGB1P09429 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
HMGB1P09429 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC23.17■■□□□ 1.3
HMGB1P09429 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC23.17■■□□□ 1.3
HMGB1P09429 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
HMGB1P09429 AC093484.2-201ENST00000580996 2166 ntBASIC23.17■■□□□ 1.3
HMGB1P09429 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC23.17■■□□□ 1.3
HMGB1P09429 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
HMGB1P09429 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
HMGB1P09429 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
HMGB1P09429 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
HMGB1P09429 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC23.16■■□□□ 1.3
HMGB1P09429 GOLGA6L3-201ENST00000507199 1679 ntBASIC23.16■■□□□ 1.3
HMGB1P09429 AC116562.4-201ENST00000641316 2276 ntBASIC23.16■■□□□ 1.3
HMGB1P09429 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
HMGB1P09429 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
HMGB1P09429 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
HMGB1P09429 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC23.16■■□□□ 1.3
HMGB1P09429 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC23.16■■□□□ 1.3
HMGB1P09429 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC23.16■■□□□ 1.3
HMGB1P09429 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
HMGB1P09429 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC23.16■■□□□ 1.3
HMGB1P09429 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
HMGB1P09429 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
HMGB1P09429 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
HMGB1P09429 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
HMGB1P09429 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC23.16■■□□□ 1.3
HMGB1P09429 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
HMGB1P09429 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
HMGB1P09429 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC23.16■■□□□ 1.3
HMGB1P09429 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
HMGB1P09429 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC23.15■■□□□ 1.3
HMGB1P09429 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
HMGB1P09429 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
HMGB1P09429 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC23.15■■□□□ 1.3
HMGB1P09429 RNA5SP413-201ENST00000516373 109 ntBASIC23.15■■□□□ 1.3
HMGB1P09429 AC008403.3-201ENST00000598924 454 ntBASIC23.15■■□□□ 1.3
HMGB1P09429 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
HMGB1P09429 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
HMGB1P09429 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC23.15■■□□□ 1.3
HMGB1P09429 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
HMGB1P09429 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC23.15■■□□□ 1.3
HMGB1P09429 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC23.14■■□□□ 1.3
HMGB1P09429 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
HMGB1P09429 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC23.14■■□□□ 1.3
HMGB1P09429 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC23.14■■□□□ 1.3
HMGB1P09429 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
HMGB1P09429 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
HMGB1P09429 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.3
HMGB1P09429 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
HMGB1P09429 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC23.14■■□□□ 1.29
HMGB1P09429 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
HMGB1P09429 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC23.14■■□□□ 1.29
HMGB1P09429 AP003097.1-201ENST00000530657 1135 ntBASIC23.14■■□□□ 1.29
HMGB1P09429 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
HMGB1P09429 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC23.14■■□□□ 1.29
HMGB1P09429 KRT18P6-201ENST00000555540 1265 ntBASIC23.14■■□□□ 1.29
HMGB1P09429 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
HMGB1P09429 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC23.14■■□□□ 1.29
HMGB1P09429 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC23.14■■□□□ 1.29
HMGB1P09429 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
HMGB1P09429 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
HMGB1P09429 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
HMGB1P09429 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.29
HMGB1P09429 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
HMGB1P09429 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC23.13■■□□□ 1.29
HMGB1P09429 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC23.13■■□□□ 1.29
HMGB1P09429 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
HMGB1P09429 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
HMGB1P09429 TP73-202ENST00000354437 2140 ntTSL 5 BASIC23.13■■□□□ 1.29
HMGB1P09429 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC23.13■■□□□ 1.29
HMGB1P09429 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC23.13■■□□□ 1.29
HMGB1P09429 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
HMGB1P09429 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC23.13■■□□□ 1.29
HMGB1P09429 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
HMGB1P09429 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC23.13■■□□□ 1.29
HMGB1P09429 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC23.13■■□□□ 1.29
HMGB1P09429 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC23.13■■□□□ 1.29
HMGB1P09429 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
HMGB1P09429 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
HMGB1P09429 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC23.13■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms