Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
HLA-DOAP06340 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC23.18■■□□□ 1.3
HLA-DOAP06340 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC23.18■■□□□ 1.3
HLA-DOAP06340 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
HLA-DOAP06340 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC23.18■■□□□ 1.3
HLA-DOAP06340 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
HLA-DOAP06340 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC23.18■■□□□ 1.3
HLA-DOAP06340 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
HLA-DOAP06340 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
HLA-DOAP06340 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
HLA-DOAP06340 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
HLA-DOAP06340 AP005212.1-201ENST00000581547 1997 ntBASIC23.18■■□□□ 1.3
HLA-DOAP06340 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
HLA-DOAP06340 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
HLA-DOAP06340 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC23.17■■□□□ 1.3
HLA-DOAP06340 KRT8P8-201ENST00000434750 1448 ntBASIC23.17■■□□□ 1.3
HLA-DOAP06340 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC23.17■■□□□ 1.3
HLA-DOAP06340 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
HLA-DOAP06340 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
HLA-DOAP06340 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC23.17■■□□□ 1.3
HLA-DOAP06340 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
HLA-DOAP06340 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC23.17■■□□□ 1.3
HLA-DOAP06340 AC011506.1-201ENST00000474329 610 ntBASIC23.17■■□□□ 1.3
HLA-DOAP06340 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC23.17■■□□□ 1.3
HLA-DOAP06340 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC23.17■■□□□ 1.3
HLA-DOAP06340 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC23.17■■□□□ 1.3
HLA-DOAP06340 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC23.17■■□□□ 1.3
HLA-DOAP06340 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
HLA-DOAP06340 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
HLA-DOAP06340 CYP2D8P-201ENST00000433633 1490 ntBASIC23.17■■□□□ 1.3
HLA-DOAP06340 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
HLA-DOAP06340 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
HLA-DOAP06340 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
HLA-DOAP06340 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC23.16■■□□□ 1.3
HLA-DOAP06340 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
HLA-DOAP06340 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
HLA-DOAP06340 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
HLA-DOAP06340 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
HLA-DOAP06340 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
HLA-DOAP06340 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC23.16■■□□□ 1.3
HLA-DOAP06340 TK2-213ENST00000563369 882 ntTSL 5 BASIC23.16■■□□□ 1.3
HLA-DOAP06340 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC23.16■■□□□ 1.3
HLA-DOAP06340 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
HLA-DOAP06340 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC23.16■■□□□ 1.3
HLA-DOAP06340 AC010331.1-201ENST00000611423 582 ntBASIC23.16■■□□□ 1.3
HLA-DOAP06340 AC005363.2-201ENST00000618631 242 ntBASIC23.16■■□□□ 1.3
HLA-DOAP06340 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
HLA-DOAP06340 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC23.16■■□□□ 1.3
HLA-DOAP06340 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
HLA-DOAP06340 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC23.16■■□□□ 1.3
HLA-DOAP06340 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC23.15■■□□□ 1.3
HLA-DOAP06340 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
HLA-DOAP06340 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC23.15■■□□□ 1.3
HLA-DOAP06340 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
HLA-DOAP06340 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC23.15■■□□□ 1.3
HLA-DOAP06340 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
HLA-DOAP06340 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC23.15■■□□□ 1.3
HLA-DOAP06340 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC23.15■■□□□ 1.3
HLA-DOAP06340 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC23.15■■□□□ 1.3
HLA-DOAP06340 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC23.15■■□□□ 1.3
HLA-DOAP06340 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
HLA-DOAP06340 AC010947.1-201ENST00000623454 693 ntBASIC23.15■■□□□ 1.3
HLA-DOAP06340 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC23.15■■□□□ 1.3
HLA-DOAP06340 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
HLA-DOAP06340 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
HLA-DOAP06340 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC23.15■■□□□ 1.3
HLA-DOAP06340 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
HLA-DOAP06340 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
HLA-DOAP06340 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
HLA-DOAP06340 AL512408.1-201ENST00000569378 2000 ntBASIC23.15■■□□□ 1.3
HLA-DOAP06340 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC23.14■■□□□ 1.3
HLA-DOAP06340 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.3
HLA-DOAP06340 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
HLA-DOAP06340 KRT18P22-201ENST00000402024 1347 ntBASIC23.14■■□□□ 1.3
HLA-DOAP06340 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.3
HLA-DOAP06340 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC23.14■■□□□ 1.29
HLA-DOAP06340 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
HLA-DOAP06340 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC23.14■■□□□ 1.29
HLA-DOAP06340 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.29
HLA-DOAP06340 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC23.14■■□□□ 1.29
HLA-DOAP06340 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC23.14■■□□□ 1.29
HLA-DOAP06340 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC23.14■■□□□ 1.29
HLA-DOAP06340 AP005242.2-201ENST00000580065 1175 ntBASIC23.14■■□□□ 1.29
HLA-DOAP06340 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
HLA-DOAP06340 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC23.14■■□□□ 1.29
HLA-DOAP06340 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC23.14■■□□□ 1.29
HLA-DOAP06340 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC23.14■■□□□ 1.29
HLA-DOAP06340 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC23.14■■□□□ 1.29
HLA-DOAP06340 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
HLA-DOAP06340 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC23.13■■□□□ 1.29
HLA-DOAP06340 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
HLA-DOAP06340 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC23.13■■□□□ 1.29
HLA-DOAP06340 TMPOP1-202ENST00000424642 1267 ntBASIC23.13■■□□□ 1.29
HLA-DOAP06340 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC23.13■■□□□ 1.29
HLA-DOAP06340 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC23.13■■□□□ 1.29
HLA-DOAP06340 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
HLA-DOAP06340 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC23.13■■□□□ 1.29
HLA-DOAP06340 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC23.13■■□□□ 1.29
HLA-DOAP06340 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC23.13■■□□□ 1.29
HLA-DOAP06340 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC23.13■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms