Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC26.07■■□□□ 1.76
COL3A1P02461 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC26.07■■□□□ 1.76
COL3A1P02461 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
COL3A1P02461 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC26.07■■□□□ 1.76
COL3A1P02461 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC26.07■■□□□ 1.76
COL3A1P02461 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC26.07■■□□□ 1.76
COL3A1P02461 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC26.07■■□□□ 1.76
COL3A1P02461 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
COL3A1P02461 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC26.07■■□□□ 1.76
COL3A1P02461 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC26.07■■□□□ 1.76
COL3A1P02461 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC26.07■■□□□ 1.76
COL3A1P02461 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC26.07■■□□□ 1.76
COL3A1P02461 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
COL3A1P02461 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
COL3A1P02461 AC079598.2-202ENST00000546624 1451 ntBASIC26.06■■□□□ 1.76
COL3A1P02461 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
COL3A1P02461 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
COL3A1P02461 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
COL3A1P02461 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
COL3A1P02461 B3GAT3P1-201ENST00000471720 806 ntBASIC26.06■■□□□ 1.76
COL3A1P02461 NME1-207ENST00000480143 964 ntTSL 2 BASIC26.06■■□□□ 1.76
COL3A1P02461 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC26.06■■□□□ 1.76
COL3A1P02461 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC26.06■■□□□ 1.76
COL3A1P02461 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC26.06■■□□□ 1.76
COL3A1P02461 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC26.06■■□□□ 1.76
COL3A1P02461 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
COL3A1P02461 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
COL3A1P02461 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC26.06■■□□□ 1.76
COL3A1P02461 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
COL3A1P02461 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
COL3A1P02461 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
COL3A1P02461 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC26.05■■□□□ 1.76
COL3A1P02461 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
COL3A1P02461 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC26.05■■□□□ 1.76
COL3A1P02461 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
COL3A1P02461 CR392000.1-201ENST00000624770 1228 ntBASIC26.05■■□□□ 1.76
COL3A1P02461 DECR2-212ENST00000627716 352 ntTSL 2 BASIC26.05■■□□□ 1.76
COL3A1P02461 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC26.05■■□□□ 1.76
COL3A1P02461 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
COL3A1P02461 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC26.05■■□□□ 1.76
COL3A1P02461 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
COL3A1P02461 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
COL3A1P02461 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
COL3A1P02461 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC26.05■■□□□ 1.76
COL3A1P02461 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC26.05■■□□□ 1.76
COL3A1P02461 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
COL3A1P02461 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
COL3A1P02461 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
COL3A1P02461 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
COL3A1P02461 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC26.04■■□□□ 1.76
COL3A1P02461 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC26.04■■□□□ 1.76
COL3A1P02461 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
COL3A1P02461 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
COL3A1P02461 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
COL3A1P02461 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC26.04■■□□□ 1.76
COL3A1P02461 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC26.04■■□□□ 1.76
COL3A1P02461 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC26.04■■□□□ 1.76
COL3A1P02461 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC26.04■■□□□ 1.76
COL3A1P02461 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
COL3A1P02461 GXYLT1P3-201ENST00000453058 1193 ntBASIC26.04■■□□□ 1.76
COL3A1P02461 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC26.04■■□□□ 1.76
COL3A1P02461 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC26.04■■□□□ 1.76
COL3A1P02461 RPS20-210ENST00000523936 899 ntTSL 2 BASIC26.04■■□□□ 1.76
COL3A1P02461 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC26.04■■□□□ 1.76
COL3A1P02461 AC073912.3-201ENST00000624414 853 ntBASIC26.04■■□□□ 1.76
COL3A1P02461 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
COL3A1P02461 KRT8P9-201ENST00000558927 1449 ntBASIC26.03■■□□□ 1.76
COL3A1P02461 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC26.03■■□□□ 1.76
COL3A1P02461 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC26.03■■□□□ 1.76
COL3A1P02461 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
COL3A1P02461 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
COL3A1P02461 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
COL3A1P02461 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC26.03■■□□□ 1.76
COL3A1P02461 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC26.03■■□□□ 1.76
COL3A1P02461 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC26.03■■□□□ 1.76
COL3A1P02461 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC26.03■■□□□ 1.76
COL3A1P02461 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC26.03■■□□□ 1.76
COL3A1P02461 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC26.03■■□□□ 1.76
COL3A1P02461 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC26.03■■□□□ 1.76
COL3A1P02461 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC26.03■■□□□ 1.76
COL3A1P02461 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC26.03■■□□□ 1.76
COL3A1P02461 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC26.02■■□□□ 1.76
COL3A1P02461 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC26.02■■□□□ 1.76
COL3A1P02461 RCC2P6-201ENST00000526625 1557 ntBASIC26.02■■□□□ 1.76
COL3A1P02461 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC26.02■■□□□ 1.76
COL3A1P02461 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
COL3A1P02461 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC26.02■■□□□ 1.76
COL3A1P02461 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
COL3A1P02461 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
COL3A1P02461 PTPA-216ENST00000432651 857 ntTSL 2 BASIC26.02■■□□□ 1.76
COL3A1P02461 AC011506.1-201ENST00000474329 610 ntBASIC26.02■■□□□ 1.76
COL3A1P02461 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC26.02■■□□□ 1.76
COL3A1P02461 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC26.02■■□□□ 1.76
COL3A1P02461 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC26.02■■□□□ 1.76
COL3A1P02461 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
COL3A1P02461 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
COL3A1P02461 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC26.02■■□□□ 1.76
COL3A1P02461 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
COL3A1P02461 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
COL3A1P02461 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC26.02■■□□□ 1.76
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms