Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
RAPGEF3O95398 CALM1-205ENST00000553542 877 ntTSL 5 BASIC29.61■■■□□ 2.33
RAPGEF3O95398 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC29.61■■■□□ 2.33
RAPGEF3O95398 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC29.61■■■□□ 2.33
RAPGEF3O95398 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC29.61■■■□□ 2.33
RAPGEF3O95398 AC005229.4-201ENST00000610085 2198 ntBASIC29.61■■■□□ 2.33
RAPGEF3O95398 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC29.61■■■□□ 2.33
RAPGEF3O95398 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC29.61■■■□□ 2.33
RAPGEF3O95398 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC29.61■■■□□ 2.33
RAPGEF3O95398 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
RAPGEF3O95398 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC29.6■■■□□ 2.33
RAPGEF3O95398 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
RAPGEF3O95398 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC29.6■■■□□ 2.33
RAPGEF3O95398 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC29.6■■■□□ 2.33
RAPGEF3O95398 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC29.6■■■□□ 2.33
RAPGEF3O95398 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
RAPGEF3O95398 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
RAPGEF3O95398 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC29.6■■■□□ 2.33
RAPGEF3O95398 FAAHP1-202ENST00000446499 1238 ntBASIC29.6■■■□□ 2.33
RAPGEF3O95398 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC29.6■■■□□ 2.33
RAPGEF3O95398 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
RAPGEF3O95398 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
RAPGEF3O95398 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC29.6■■■□□ 2.33
RAPGEF3O95398 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
RAPGEF3O95398 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC29.6■■■□□ 2.33
RAPGEF3O95398 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
RAPGEF3O95398 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
RAPGEF3O95398 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC29.59■■■□□ 2.33
RAPGEF3O95398 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC29.59■■■□□ 2.33
RAPGEF3O95398 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC29.59■■■□□ 2.33
RAPGEF3O95398 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC29.59■■■□□ 2.33
RAPGEF3O95398 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC29.59■■■□□ 2.33
RAPGEF3O95398 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC29.58■■■□□ 2.33
RAPGEF3O95398 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
RAPGEF3O95398 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC29.58■■■□□ 2.33
RAPGEF3O95398 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC29.58■■■□□ 2.33
RAPGEF3O95398 MIR3180-1-201ENST00000580374 94 ntBASIC29.58■■■□□ 2.33
RAPGEF3O95398 MIR3180-3-201ENST00000584616 94 ntBASIC29.58■■■□□ 2.33
RAPGEF3O95398 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC29.57■■■□□ 2.32
RAPGEF3O95398 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC29.57■■■□□ 2.32
RAPGEF3O95398 AL022342.1-201ENST00000400363 863 ntBASIC29.57■■■□□ 2.32
RAPGEF3O95398 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC29.57■■■□□ 2.32
RAPGEF3O95398 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC29.57■■■□□ 2.32
RAPGEF3O95398 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC29.57■■■□□ 2.32
RAPGEF3O95398 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
RAPGEF3O95398 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC29.57■■■□□ 2.32
RAPGEF3O95398 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC29.56■■■□□ 2.32
RAPGEF3O95398 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
RAPGEF3O95398 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC29.56■■■□□ 2.32
RAPGEF3O95398 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
RAPGEF3O95398 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC29.56■■■□□ 2.32
RAPGEF3O95398 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
RAPGEF3O95398 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
RAPGEF3O95398 AP000523.1-201ENST00000398242 1049 ntBASIC29.56■■■□□ 2.32
RAPGEF3O95398 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC29.56■■■□□ 2.32
RAPGEF3O95398 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC29.56■■■□□ 2.32
RAPGEF3O95398 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC29.56■■■□□ 2.32
RAPGEF3O95398 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC29.56■■■□□ 2.32
RAPGEF3O95398 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC29.56■■■□□ 2.32
RAPGEF3O95398 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC29.56■■■□□ 2.32
RAPGEF3O95398 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC29.56■■■□□ 2.32
RAPGEF3O95398 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC29.56■■■□□ 2.32
RAPGEF3O95398 TBCB-205ENST00000585746 875 ntTSL 3 BASIC29.56■■■□□ 2.32
RAPGEF3O95398 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC29.56■■■□□ 2.32
RAPGEF3O95398 FGF14-AS2-201ENST00000606448 1074 ntBASIC29.56■■■□□ 2.32
RAPGEF3O95398 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC29.56■■■□□ 2.32
RAPGEF3O95398 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC29.56■■■□□ 2.32
RAPGEF3O95398 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC29.56■■■□□ 2.32
RAPGEF3O95398 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC29.56■■■□□ 2.32
RAPGEF3O95398 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC29.56■■■□□ 2.32
RAPGEF3O95398 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC29.56■■■□□ 2.32
RAPGEF3O95398 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC29.56■■■□□ 2.32
RAPGEF3O95398 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC29.55■■■□□ 2.32
RAPGEF3O95398 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
RAPGEF3O95398 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC29.55■■■□□ 2.32
RAPGEF3O95398 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
RAPGEF3O95398 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC29.55■■■□□ 2.32
RAPGEF3O95398 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC29.55■■■□□ 2.32
RAPGEF3O95398 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC29.54■■■□□ 2.32
RAPGEF3O95398 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC29.54■■■□□ 2.32
RAPGEF3O95398 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC29.54■■■□□ 2.32
RAPGEF3O95398 GXYLT1P4-201ENST00000613576 1192 ntBASIC29.54■■■□□ 2.32
RAPGEF3O95398 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC29.54■■■□□ 2.32
RAPGEF3O95398 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC29.54■■■□□ 2.32
RAPGEF3O95398 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
RAPGEF3O95398 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
RAPGEF3O95398 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
RAPGEF3O95398 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
RAPGEF3O95398 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC29.53■■■□□ 2.32
RAPGEF3O95398 GALC-202ENST00000393568 2054 ntTSL 2 BASIC29.53■■■□□ 2.32
RAPGEF3O95398 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC29.53■■■□□ 2.32
RAPGEF3O95398 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC29.53■■■□□ 2.32
RAPGEF3O95398 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC29.53■■■□□ 2.32
RAPGEF3O95398 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC29.53■■■□□ 2.32
RAPGEF3O95398 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
RAPGEF3O95398 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
RAPGEF3O95398 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC29.53■■■□□ 2.32
RAPGEF3O95398 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
RAPGEF3O95398 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
RAPGEF3O95398 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms