Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SHOX2O60902 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
SHOX2O60902 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SHOX2O60902 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC19.66■□□□□ 0.74
SHOX2O60902 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SHOX2O60902 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SHOX2O60902 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
SHOX2O60902 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SHOX2O60902 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
SHOX2O60902 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC19.66■□□□□ 0.74
SHOX2O60902 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SHOX2O60902 MIR4466-201ENST00000606121 54 ntBASIC19.66■□□□□ 0.74
SHOX2O60902 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SHOX2O60902 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SHOX2O60902 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SHOX2O60902 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC19.66■□□□□ 0.74
SHOX2O60902 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC19.66■□□□□ 0.74
SHOX2O60902 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
SHOX2O60902 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SHOX2O60902 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC19.65■□□□□ 0.74
SHOX2O60902 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHOX2O60902 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
SHOX2O60902 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHOX2O60902 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SHOX2O60902 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHOX2O60902 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHOX2O60902 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SHOX2O60902 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHOX2O60902 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHOX2O60902 POU5F1P4-201ENST00000413175 1085 ntBASIC19.65■□□□□ 0.74
SHOX2O60902 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
SHOX2O60902 AC092171.4-201ENST00000609130 632 ntBASIC19.65■□□□□ 0.74
SHOX2O60902 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHOX2O60902 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SHOX2O60902 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHOX2O60902 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHOX2O60902 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
SHOX2O60902 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHOX2O60902 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SHOX2O60902 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHOX2O60902 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHOX2O60902 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC19.65■□□□□ 0.74
SHOX2O60902 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC19.65■□□□□ 0.74
SHOX2O60902 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHOX2O60902 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHOX2O60902 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
SHOX2O60902 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHOX2O60902 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHOX2O60902 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
SHOX2O60902 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.74
SHOX2O60902 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
SHOX2O60902 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
SHOX2O60902 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SHOX2O60902 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SHOX2O60902 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SHOX2O60902 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SHOX2O60902 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
SHOX2O60902 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC19.64■□□□□ 0.73
SHOX2O60902 AL356441.2-201ENST00000443009 864 ntBASIC19.64■□□□□ 0.73
SHOX2O60902 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC19.64■□□□□ 0.73
SHOX2O60902 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SHOX2O60902 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
SHOX2O60902 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
SHOX2O60902 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SHOX2O60902 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
SHOX2O60902 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SHOX2O60902 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC19.64■□□□□ 0.73
SHOX2O60902 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC19.64■□□□□ 0.73
SHOX2O60902 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SHOX2O60902 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SHOX2O60902 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SHOX2O60902 ESPNP-201ENST00000270691 2015 ntBASIC19.64■□□□□ 0.73
SHOX2O60902 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SHOX2O60902 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
SHOX2O60902 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC19.63■□□□□ 0.73
SHOX2O60902 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
SHOX2O60902 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SHOX2O60902 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC19.63■□□□□ 0.73
SHOX2O60902 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SHOX2O60902 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SHOX2O60902 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC19.63■□□□□ 0.73
SHOX2O60902 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SHOX2O60902 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
SHOX2O60902 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC19.63■□□□□ 0.73
SHOX2O60902 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SHOX2O60902 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
SHOX2O60902 AL138724.1-201ENST00000606771 1088 ntBASIC19.63■□□□□ 0.73
SHOX2O60902 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC19.63■□□□□ 0.73
SHOX2O60902 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC19.63■□□□□ 0.73
SHOX2O60902 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SHOX2O60902 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
SHOX2O60902 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SHOX2O60902 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SHOX2O60902 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC19.63■□□□□ 0.73
SHOX2O60902 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SHOX2O60902 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SHOX2O60902 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
SHOX2O60902 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC19.62■□□□□ 0.73
SHOX2O60902 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SHOX2O60902 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms