Protein–RNA interactions for Protein: A0A5B6

TCRBV3S1, T-cell receptor beta variable 28 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV3S1A0A5B6 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TCRBV3S1A0A5B6 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC18.4■□□□□ 0.54
TCRBV3S1A0A5B6 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
TCRBV3S1A0A5B6 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC18.39■□□□□ 0.54
TCRBV3S1A0A5B6 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.54
TCRBV3S1A0A5B6 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
TCRBV3S1A0A5B6 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
TCRBV3S1A0A5B6 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC18.39■□□□□ 0.54
TCRBV3S1A0A5B6 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
TCRBV3S1A0A5B6 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
TCRBV3S1A0A5B6 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC18.39■□□□□ 0.54
TCRBV3S1A0A5B6 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC18.39■□□□□ 0.54
TCRBV3S1A0A5B6 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
TCRBV3S1A0A5B6 NOC2LP2-201ENST00000407594 1944 ntBASIC18.39■□□□□ 0.53
TCRBV3S1A0A5B6 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TCRBV3S1A0A5B6 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC18.39■□□□□ 0.53
TCRBV3S1A0A5B6 PHGDH-210ENST00000641115 1638 ntBASIC18.39■□□□□ 0.53
TCRBV3S1A0A5B6 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TCRBV3S1A0A5B6 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TCRBV3S1A0A5B6 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TCRBV3S1A0A5B6 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
TCRBV3S1A0A5B6 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC18.39■□□□□ 0.53
TCRBV3S1A0A5B6 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC18.39■□□□□ 0.53
TCRBV3S1A0A5B6 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC18.39■□□□□ 0.53
TCRBV3S1A0A5B6 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC18.39■□□□□ 0.53
TCRBV3S1A0A5B6 MIR6084-201ENST00000622012 110 ntBASIC18.39■□□□□ 0.53
TCRBV3S1A0A5B6 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TCRBV3S1A0A5B6 Z98044.1-201ENST00000632503 1764 ntBASIC18.39■□□□□ 0.53
TCRBV3S1A0A5B6 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC18.39■□□□□ 0.53
TCRBV3S1A0A5B6 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
TCRBV3S1A0A5B6 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC18.39■□□□□ 0.53
TCRBV3S1A0A5B6 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC18.38■□□□□ 0.53
TCRBV3S1A0A5B6 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TCRBV3S1A0A5B6 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TCRBV3S1A0A5B6 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC18.38■□□□□ 0.53
TCRBV3S1A0A5B6 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC18.38■□□□□ 0.53
TCRBV3S1A0A5B6 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TCRBV3S1A0A5B6 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TCRBV3S1A0A5B6 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TCRBV3S1A0A5B6 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TCRBV3S1A0A5B6 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TCRBV3S1A0A5B6 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TCRBV3S1A0A5B6 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TCRBV3S1A0A5B6 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC18.38■□□□□ 0.53
TCRBV3S1A0A5B6 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC18.38■□□□□ 0.53
TCRBV3S1A0A5B6 PBX2P1-201ENST00000493219 1291 ntBASIC18.38■□□□□ 0.53
TCRBV3S1A0A5B6 AF213884.3-201ENST00000563833 479 ntBASIC18.38■□□□□ 0.53
TCRBV3S1A0A5B6 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC18.38■□□□□ 0.53
TCRBV3S1A0A5B6 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC18.38■□□□□ 0.53
TCRBV3S1A0A5B6 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC18.38■□□□□ 0.53
TCRBV3S1A0A5B6 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
TCRBV3S1A0A5B6 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TCRBV3S1A0A5B6 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC18.38■□□□□ 0.53
TCRBV3S1A0A5B6 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TCRBV3S1A0A5B6 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC18.38■□□□□ 0.53
TCRBV3S1A0A5B6 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TCRBV3S1A0A5B6 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
TCRBV3S1A0A5B6 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC18.38■□□□□ 0.53
TCRBV3S1A0A5B6 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TCRBV3S1A0A5B6 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TCRBV3S1A0A5B6 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TCRBV3S1A0A5B6 EFTUD1P1-204ENST00000560401 1798 ntBASIC18.37■□□□□ 0.53
TCRBV3S1A0A5B6 AC020916.1-201ENST00000587762 1774 ntBASIC18.37■□□□□ 0.53
TCRBV3S1A0A5B6 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TCRBV3S1A0A5B6 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TCRBV3S1A0A5B6 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC18.37■□□□□ 0.53
TCRBV3S1A0A5B6 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TCRBV3S1A0A5B6 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TCRBV3S1A0A5B6 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC18.37■□□□□ 0.53
TCRBV3S1A0A5B6 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TCRBV3S1A0A5B6 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC18.37■□□□□ 0.53
TCRBV3S1A0A5B6 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC18.37■□□□□ 0.53
TCRBV3S1A0A5B6 AC106739.1-201ENST00000617035 715 ntBASIC18.37■□□□□ 0.53
TCRBV3S1A0A5B6 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TCRBV3S1A0A5B6 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TCRBV3S1A0A5B6 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TCRBV3S1A0A5B6 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC18.37■□□□□ 0.53
TCRBV3S1A0A5B6 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC18.37■□□□□ 0.53
TCRBV3S1A0A5B6 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC18.37■□□□□ 0.53
TCRBV3S1A0A5B6 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TCRBV3S1A0A5B6 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC18.37■□□□□ 0.53
TCRBV3S1A0A5B6 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TCRBV3S1A0A5B6 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TCRBV3S1A0A5B6 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC18.37■□□□□ 0.53
TCRBV3S1A0A5B6 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC18.37■□□□□ 0.53
TCRBV3S1A0A5B6 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TCRBV3S1A0A5B6 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
TCRBV3S1A0A5B6 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TCRBV3S1A0A5B6 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
TCRBV3S1A0A5B6 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC18.36■□□□□ 0.53
TCRBV3S1A0A5B6 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
TCRBV3S1A0A5B6 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TCRBV3S1A0A5B6 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
TCRBV3S1A0A5B6 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TCRBV3S1A0A5B6 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
TCRBV3S1A0A5B6 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TCRBV3S1A0A5B6 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TCRBV3S1A0A5B6 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
TCRBV3S1A0A5B6 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
TCRBV3S1A0A5B6 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms