Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SMIM28A0A1B0GU29 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
SMIM28A0A1B0GU29 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC21.1■□□□□ 0.97
SMIM28A0A1B0GU29 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC21.1■□□□□ 0.97
SMIM28A0A1B0GU29 RBM17P1-201ENST00000453646 1190 ntBASIC21.1■□□□□ 0.97
SMIM28A0A1B0GU29 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC21.1■□□□□ 0.97
SMIM28A0A1B0GU29 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SMIM28A0A1B0GU29 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC21.1■□□□□ 0.97
SMIM28A0A1B0GU29 HLA-A-209ENST00000638375 975 ntBASIC21.1■□□□□ 0.97
SMIM28A0A1B0GU29 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
SMIM28A0A1B0GU29 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
SMIM28A0A1B0GU29 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SMIM28A0A1B0GU29 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC21.1■□□□□ 0.97
SMIM28A0A1B0GU29 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
SMIM28A0A1B0GU29 KRT8P8-201ENST00000434750 1448 ntBASIC21.1■□□□□ 0.97
SMIM28A0A1B0GU29 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
SMIM28A0A1B0GU29 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC21.1■□□□□ 0.97
SMIM28A0A1B0GU29 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SMIM28A0A1B0GU29 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SMIM28A0A1B0GU29 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC21.1■□□□□ 0.97
SMIM28A0A1B0GU29 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SMIM28A0A1B0GU29 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SMIM28A0A1B0GU29 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SMIM28A0A1B0GU29 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
SMIM28A0A1B0GU29 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SMIM28A0A1B0GU29 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
SMIM28A0A1B0GU29 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
SMIM28A0A1B0GU29 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC21.09■□□□□ 0.97
SMIM28A0A1B0GU29 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SMIM28A0A1B0GU29 AC087499.1-201ENST00000418141 1075 ntBASIC21.09■□□□□ 0.97
SMIM28A0A1B0GU29 ECEL1P3-201ENST00000427961 737 ntBASIC21.09■□□□□ 0.97
SMIM28A0A1B0GU29 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SMIM28A0A1B0GU29 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC21.09■□□□□ 0.97
SMIM28A0A1B0GU29 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SMIM28A0A1B0GU29 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SMIM28A0A1B0GU29 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SMIM28A0A1B0GU29 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SMIM28A0A1B0GU29 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
SMIM28A0A1B0GU29 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
SMIM28A0A1B0GU29 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SMIM28A0A1B0GU29 AC079598.2-202ENST00000546624 1451 ntBASIC21.08■□□□□ 0.97
SMIM28A0A1B0GU29 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SMIM28A0A1B0GU29 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC21.08■□□□□ 0.97
SMIM28A0A1B0GU29 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
SMIM28A0A1B0GU29 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SMIM28A0A1B0GU29 AC004980.1-204ENST00000429707 299 ntBASIC21.08■□□□□ 0.97
SMIM28A0A1B0GU29 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SMIM28A0A1B0GU29 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC21.08■□□□□ 0.97
SMIM28A0A1B0GU29 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SMIM28A0A1B0GU29 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC21.08■□□□□ 0.97
SMIM28A0A1B0GU29 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC21.08■□□□□ 0.97
SMIM28A0A1B0GU29 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC21.08■□□□□ 0.97
SMIM28A0A1B0GU29 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC21.08■□□□□ 0.97
SMIM28A0A1B0GU29 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SMIM28A0A1B0GU29 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SMIM28A0A1B0GU29 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SMIM28A0A1B0GU29 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC21.08■□□□□ 0.96
SMIM28A0A1B0GU29 TCF3P1-201ENST00000423021 1937 ntBASIC21.08■□□□□ 0.96
SMIM28A0A1B0GU29 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SMIM28A0A1B0GU29 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
SMIM28A0A1B0GU29 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC21.07■□□□□ 0.96
SMIM28A0A1B0GU29 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SMIM28A0A1B0GU29 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SMIM28A0A1B0GU29 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
SMIM28A0A1B0GU29 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC21.07■□□□□ 0.96
SMIM28A0A1B0GU29 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC21.07■□□□□ 0.96
SMIM28A0A1B0GU29 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SMIM28A0A1B0GU29 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC21.07■□□□□ 0.96
SMIM28A0A1B0GU29 MESTP1-201ENST00000404287 994 ntBASIC21.07■□□□□ 0.96
SMIM28A0A1B0GU29 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC21.07■□□□□ 0.96
SMIM28A0A1B0GU29 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC21.07■□□□□ 0.96
SMIM28A0A1B0GU29 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC21.07■□□□□ 0.96
SMIM28A0A1B0GU29 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SMIM28A0A1B0GU29 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC21.07■□□□□ 0.96
SMIM28A0A1B0GU29 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC21.07■□□□□ 0.96
SMIM28A0A1B0GU29 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SMIM28A0A1B0GU29 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC21.07■□□□□ 0.96
SMIM28A0A1B0GU29 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SMIM28A0A1B0GU29 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
SMIM28A0A1B0GU29 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SMIM28A0A1B0GU29 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC21.07■□□□□ 0.96
SMIM28A0A1B0GU29 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SMIM28A0A1B0GU29 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SMIM28A0A1B0GU29 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC21.06■□□□□ 0.96
SMIM28A0A1B0GU29 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SMIM28A0A1B0GU29 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC21.06■□□□□ 0.96
SMIM28A0A1B0GU29 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC21.06■□□□□ 0.96
SMIM28A0A1B0GU29 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC21.06■□□□□ 0.96
SMIM28A0A1B0GU29 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
SMIM28A0A1B0GU29 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SMIM28A0A1B0GU29 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SMIM28A0A1B0GU29 UNC93B2-201ENST00000285383 730 ntBASIC21.06■□□□□ 0.96
SMIM28A0A1B0GU29 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SMIM28A0A1B0GU29 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SMIM28A0A1B0GU29 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SMIM28A0A1B0GU29 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SMIM28A0A1B0GU29 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
SMIM28A0A1B0GU29 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
SMIM28A0A1B0GU29 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC21.06■□□□□ 0.96
SMIM28A0A1B0GU29 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC21.06■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms