Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRAV1-1A0A0B4J248 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC15.35■□□□□ 0.05
TRAV1-1A0A0B4J248 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TRAV1-1A0A0B4J248 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRAV1-1A0A0B4J248 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRAV1-1A0A0B4J248 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC15.35■□□□□ 0.05
TRAV1-1A0A0B4J248 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRAV1-1A0A0B4J248 MIR3621-201ENST00000580529 85 ntBASIC15.35■□□□□ 0.05
TRAV1-1A0A0B4J248 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TRAV1-1A0A0B4J248 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRAV1-1A0A0B4J248 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
TRAV1-1A0A0B4J248 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TRAV1-1A0A0B4J248 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRAV1-1A0A0B4J248 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRAV1-1A0A0B4J248 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC15.35■□□□□ 0.05
TRAV1-1A0A0B4J248 KRT16P6-202ENST00000425692 1426 ntBASIC15.34■□□□□ 0.05
TRAV1-1A0A0B4J248 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRAV1-1A0A0B4J248 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TRAV1-1A0A0B4J248 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC15.34■□□□□ 0.05
TRAV1-1A0A0B4J248 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
TRAV1-1A0A0B4J248 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRAV1-1A0A0B4J248 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRAV1-1A0A0B4J248 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRAV1-1A0A0B4J248 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
TRAV1-1A0A0B4J248 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRAV1-1A0A0B4J248 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC15.34■□□□□ 0.05
TRAV1-1A0A0B4J248 AC120498.10-201ENST00000621827 505 ntBASIC15.34■□□□□ 0.05
TRAV1-1A0A0B4J248 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC15.34■□□□□ 0.05
TRAV1-1A0A0B4J248 ABALON-201ENST00000629058 1903 ntBASIC15.34■□□□□ 0.05
TRAV1-1A0A0B4J248 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRAV1-1A0A0B4J248 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC15.34■□□□□ 0.05
TRAV1-1A0A0B4J248 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRAV1-1A0A0B4J248 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC15.34■□□□□ 0.05
TRAV1-1A0A0B4J248 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRAV1-1A0A0B4J248 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRAV1-1A0A0B4J248 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRAV1-1A0A0B4J248 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TRAV1-1A0A0B4J248 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRAV1-1A0A0B4J248 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRAV1-1A0A0B4J248 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRAV1-1A0A0B4J248 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.05
TRAV1-1A0A0B4J248 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
TRAV1-1A0A0B4J248 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC15.33■□□□□ 0.05
TRAV1-1A0A0B4J248 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
TRAV1-1A0A0B4J248 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
TRAV1-1A0A0B4J248 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC15.33■□□□□ 0.05
TRAV1-1A0A0B4J248 USP39-202ENST00000409025 1946 ntTSL 5 BASIC15.33■□□□□ 0.05
TRAV1-1A0A0B4J248 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.05
TRAV1-1A0A0B4J248 FP475955.4-201ENST00000623131 1990 ntBASIC15.33■□□□□ 0.05
TRAV1-1A0A0B4J248 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TRAV1-1A0A0B4J248 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TRAV1-1A0A0B4J248 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC15.33■□□□□ 0.04
TRAV1-1A0A0B4J248 MFF-208ENST00000409616 1247 ntTSL 5 BASIC15.33■□□□□ 0.04
TRAV1-1A0A0B4J248 BX842568.3-201ENST00000418104 571 ntBASIC15.33■□□□□ 0.04
TRAV1-1A0A0B4J248 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
TRAV1-1A0A0B4J248 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
TRAV1-1A0A0B4J248 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
TRAV1-1A0A0B4J248 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TRAV1-1A0A0B4J248 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
TRAV1-1A0A0B4J248 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TRAV1-1A0A0B4J248 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TRAV1-1A0A0B4J248 MADD-208ENST00000405573 1823 ntTSL 5 BASIC15.33■□□□□ 0.04
TRAV1-1A0A0B4J248 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC15.33■□□□□ 0.04
TRAV1-1A0A0B4J248 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
TRAV1-1A0A0B4J248 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
TRAV1-1A0A0B4J248 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TRAV1-1A0A0B4J248 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TRAV1-1A0A0B4J248 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC15.33■□□□□ 0.04
TRAV1-1A0A0B4J248 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
TRAV1-1A0A0B4J248 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC15.32■□□□□ 0.04
TRAV1-1A0A0B4J248 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV1-1A0A0B4J248 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
TRAV1-1A0A0B4J248 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV1-1A0A0B4J248 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV1-1A0A0B4J248 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC15.32■□□□□ 0.04
TRAV1-1A0A0B4J248 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV1-1A0A0B4J248 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC15.32■□□□□ 0.04
TRAV1-1A0A0B4J248 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV1-1A0A0B4J248 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV1-1A0A0B4J248 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV1-1A0A0B4J248 LHPP-203ENST00000392757 840 ntTSL 3 BASIC15.32■□□□□ 0.04
TRAV1-1A0A0B4J248 IGHV3-19-201ENST00000521488 291 ntBASIC15.32■□□□□ 0.04
TRAV1-1A0A0B4J248 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC15.32■□□□□ 0.04
TRAV1-1A0A0B4J248 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC15.32■□□□□ 0.04
TRAV1-1A0A0B4J248 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV1-1A0A0B4J248 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV1-1A0A0B4J248 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV1-1A0A0B4J248 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV1-1A0A0B4J248 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
TRAV1-1A0A0B4J248 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV1-1A0A0B4J248 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV1-1A0A0B4J248 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC15.32■□□□□ 0.04
TRAV1-1A0A0B4J248 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV1-1A0A0B4J248 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV1-1A0A0B4J248 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV1-1A0A0B4J248 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV1-1A0A0B4J248 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV1-1A0A0B4J248 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV1-1A0A0B4J248 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV1-1A0A0B4J248 TEX21P-204ENST00000641479 1693 ntBASIC15.32■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms